Lung function and microbiota diversity in cystic fibrosis

Priorities for the next 10 years of human microbiome research

(2019) Lita Proctor   NATURE

Sputum microbiota is predictive of long-term clinical outcomes in young adults with cystic fibrosis

(2018) Nicole Acosta et al.   THORAX

Diet induced obesity is independent of metabolic endotoxemia and TLR4 signalling, but markedly increases hypothalamic expression of the acute phase protein, SerpinA3N

(2018) Matthew J. Dalby et al.   Scientific Reports

Airway microbiota across age and disease spectrum in cystic fibrosis

(2017) Edith T. Zemanick et al.   EUROPEAN RESPIRATORY JOURNAL

Global Strategy for the Diagnosis, Management and Prevention of Chronic Obstructive Lung Disease 2017 Report

(2017) Claus F. Vogelmeier et al.   RESPIROLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Siblings of patients with Crohn’s disease exhibit a biologically relevant dysbiosis in mucosal microbial metacommunities

(2015) Charlotte Hedin et al.   GUT

Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention

(2015) Leah Cuthbertson et al.   ISME Journal

Rapid Detection of Emerging Pathogens and Loss of Microbial Diversity Associated with Severe Lung Disease in Cystic Fibrosis

(2015) William G. Flight et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Implications of multiple freeze-thawing on respiratory samples for culture-independent analyses

(2015) Leah Cuthbertson et al.   Journal of Cystic Fibrosis

Lung microbiota across age and disease stage in cystic fibrosis

(2015) Bryan Coburn et al.   Scientific Reports

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

(2014) Pier Luigi Buttigieg et al.   FEMS MICROBIOLOGY ECOLOGY

Time between Collection and Storage Significantly Influences Bacterial Sequence Composition in Sputum Samples from Cystic Fibrosis Respiratory Infections

(2014) L. Cuthbertson et al.   JOURNAL OF CLINICAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Molecular detection of CF lung pathogens: Current status and future potential

(2013) Sally H. Pattison et al.   Journal of Cystic Fibrosis

Inflammation and Airway Microbiota during Cystic Fibrosis Pulmonary Exacerbations

(2013) Edith T. Zemanick et al.   PLoS One

Interpreting infective microbiota: the importance of an ecological perspective

(2013) Geraint B. Rogers et al.   TRENDS IN MICROBIOLOGY

Multi-ethnic reference values for spirometry for the 3–95-yr age range: the global lung function 2012 equations

(2012) Philip H. Quanjer et al.   EUROPEAN RESPIRATORY JOURNAL

Reducing bias in bacterial community analysis of lower respiratory infections

(2012) Geraint B Rogers et al.   ISME Journal

The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale

(2012) Christina Hazard et al.   ISME Journal

Decade-long bacterial community dynamics in cystic fibrosis airways

(2012) J. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The new microbiology of cystic fibrosis: it takes a community

(2012) John LiPuma   THORAX

Understanding the natural progression in %FEV1decline in patients with cystic fibrosis: a longitudinal study

(2012) David Taylor-Robinson et al.   THORAX

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

(2010) Christopher J van der Gast et al.   ISME Journal

Analysis of the Bacterial Communities Present in Lungs of Patients with Cystic Fibrosis from American and British Centers

(2010) F. A. Stressmann et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients

(2010) Michael J. Cox et al.   PLoS One

Anthropogenic disturbance affects the structure of bacterial communities

(2009) Duane Ager et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Monitoring Respiratory Disease Severity in Cystic Fibrosis

(2009) Jane C Davies   Respiratory Care

Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors

(2008) Christopher J. Van Der Gast et al.   ENVIRONMENTAL MICROBIOLOGY