halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments
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Title
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments
Authors
Keywords
-
Journal
GigaScience
Volume 9, Issue 6, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-05-28
DOI
10.1093/gigascience/giaa047
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- (2020) Ksenia Krasheninnikova et al. GigaScience
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- (2017) Adrian M Altenhoff et al. NUCLEIC ACIDS RESEARCH
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- (2016) Siew Woh Choo et al. GENOME RESEARCH
- SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes
- (2014) Guénola Drillon et al. PLoS One
- Comparative genomics reveals insights into avian genome evolution and adaptation
- (2014) G. Zhang et al. SCIENCE
- Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
- (2013) B. J. Raney et al. BIOINFORMATICS
- HAL: a hierarchical format for storing and analyzing multiple genome alignments
- (2013) Glenn Hickey et al. BIOINFORMATICS
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Cactus: Algorithms for genome multiple sequence alignment
- (2011) B. Paten et al. GENOME RESEARCH
- Cactus Graphs for Genome Comparisons
- (2011) Benedict Paten et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
- (2011) Sebastian Proost et al. NUCLEIC ACIDS RESEARCH
- SyMAP v3.4: a turnkey synteny system with application to plant genomes
- (2011) Carol Soderlund et al. NUCLEIC ACIDS RESEARCH
- Genome-wide synteny through highly sensitive sequence alignment: Satsuma
- (2010) M. G. Grabherr et al. BIOINFORMATICS
- DRIMM-Synteny: decomposing genomes into evolutionary conserved segments
- (2010) Son K. Pham et al. BIOINFORMATICS
- CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes
- (2010) Christian Rödelsperger et al. PLoS One
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