4.7 Article

Acylcarnitines are anticoagulants that inhibit factor Xa and are reduced in venous thrombosis, based on metabolomics data

Journal

BLOOD
Volume 126, Issue 13, Pages 1595-1600

Publisher

AMER SOC HEMATOLOGY
DOI: 10.1182/blood-2015-03-636761

Keywords

-

Categories

Funding

  1. National Institutes of Health, National Heart, Lung, and Blood Institute [HL021544, HL101034, UL1RR025774]

Ask authors/readers for more resources

In many patients with deep vein thrombosis and pulmonary embolism (venous thromboembolism, VTE), biomarkers or genetic risk factors have not been identified. To discover novel plasma metabolites associated with VTE risk, we employed liquid chromatography-mass spectrometry-based untargeted metabolomics, which do not target any specific metabolites. Using the Scripps Venous Thrombosis Registry population for a case-control study, we discovered that 10:1 and 16:1 acylcarnitines were low in plasmas of the VTE patient group compared with matched controls, respectively. Data from targeted metabolomics studies showedthat several long-chainacylcarnitines (10:1, 12:0, 12:2, 18:1, and18:2) were lower in the VTE group. Clotting assays were used to evaluate a causal relationship for low acylcarnitines in patients with VTE. Various acylcarnitines inhibited factor Xa-initiated clotting. Inhibition of factor Xaby acylcarnitines was greater for longer acyl chains. Mechanistic studies showed that 16:0 acylcarnitine had anticoagulant activity in the absence of factor Va or phospholipids. Surface plasmon resonance investigations revealed that 16:0 acylcarnitine was bound to factor Xa and that binding did not require the gamma-carboxy glutamic acid domain. In summary, our study identified low plasma levels of acylcarnitines in patients with VTE and showed that acylcarnitines have anticoagulant activity related to an ability to bind and inhibit factor Xa.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Medicine, Research & Experimental

An optimized method for the isolation of urinary extracellular vesicles for molecular phenotyping: detection of biomarkers for radiation exposure

Charles P. Hinzman, Meth Jayatilake, Sunil Bansal, Brian L. Fish, Yaoxiang Li, Yubo Zhang, Shivani Bansal, Michael Girgis, Anton Iliuk, Xiao Xu, Jose A. Fernandez, John H. Griffin, Elizabeth A. Ballew, Keith Unger, Marjan Boerma, Meetha Medhora, Amrita K. Cheema

Summary: This study compares and optimizes methods for isolation and analysis of extracellular vesicles (EVs) from small volumes of urine. The size-exclusion chromatography method is found to be the preferred method for EV isolation. Mass spectrometry analysis of EV cargo reveals radiation-induced changes in nucleotide, folate, and lipid metabolism. These findings have important implications for monitoring response to radiotherapy and other molecular phenotyping studies.

JOURNAL OF TRANSLATIONAL MEDICINE (2022)

Review Biochemistry & Molecular Biology

The Relationship between COVID-19 and Hypothalamic-Pituitary-Adrenal Axis: A Large Spectrum from Glucocorticoid Insufficiency to Excess-The CAPISCO International Expert Panel

Mojca Jensterle, Rok Herman, Andrej Janez, Wael Al Mahmeed, Khalid Al-Rasadi, Kamila Al-Alawi, Maciej Banach, Yajnavalka Banerjee, Antonio Ceriello, Mustafa Cesur, Francesco Cosentino, Massimo Galia, Su-Yen Goh, Sanjay Kalra, Peter Kempler, Nader Lessan, Paulo Lotufo, Nikolaos Papanas, Ali A. Rizvi, Raul D. Santos, Anca P. Stoian, Peter P. Toth, Vijay Viswanathan, Manfredi Rizzo

Summary: The article reviews the rationale for glucocorticoid use in COVID-19 and emphasizes the need to be cautious about glucocorticoid-induced adrenal insufficiency. The authors also discuss other mechanisms that may affect HPA axis function and the increased risk and severity of COVID-19 in patients with pre-existing HPA axis disorders.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Ecology

Mixed heavy metal stress induces global iron starvation response

Jennifer L. Goff, Yan Chen, Michael P. Thorgersen, Linh T. Hoang, Farris L. Poole II, Elizabeth G. Szink, Gary Siuzdak, Christopher J. Petzold, Michael W. W. Adams

Summary: Multiple heavy metal contamination is a common global problem that can disrupt microbial biogeochemical cycling. However, there is a lack of studies on the effects of combinations of heavy metals on bacteria. In this study, we assessed the impact of eight metal contaminants on cell processes using a multiomics approach. The combination of metals had unexpected effects on cell physiology, including a disruption of iron homeostasis and decreased activity of important enzymes. This research highlights the need for multi-metal studies to understand the impacts of complex contaminants on microbial systems.

ISME JOURNAL (2023)

Review Biochemistry & Molecular Biology

Associations between Periodontitis, COVID-19, and Cardiometabolic Complications: Molecular Mechanisms and Clinical Evidence

Giuseppe Mainas, Luigi Nibali, Mark Ide, Wael Al Mahmeed, Khalid Al-Rasadi, Kamila Al-Alawi, Maciej Banach, Yajnavalka Banerjee, Antonio Ceriello, Mustafa Cesur, Francesco Cosentino, Alberto Firenze, Massimo Galia, Su-Yen Goh, Andrej Janez, Sanjay Kalra, Nitin Kapoor, Peter Kempler, Nader Lessan, Paulo Lotufo, Nikolaos Papanas, Ali A. Rizvi, Amirhossein Sahebkar, Raul D. Santos, Anca P. Stoian, Peter P. Toth, Vijay Viswanathan, Manfredi Rizzo

Summary: Periodontitis is a disease that leads to the loss of periodontal attachment and bone resorption. COVID-19 is a contagious disease caused by SARS-CoV-2. Investigations have shown a possible relationship between periodontitis and COVID-19, as both conditions can lead to cardiometabolic impairments. This review aims to summarize the existing evidence regarding the link between periodontitis and COVID-19 and their associated complications.

METABOLITES (2023)

Article Hematology

Selective modulation of activated protein C activities by a nonactive site-targeting nanobody library

Derek S. Sim, Meenal Shukla, Cornell R. Mallari, Jose A. Fernandez, Xiao Xu, Doug Schneider, Maxine Bauzon, Terry W. Hermiston, Laurent O. Mosnier

Summary: Activated protein C (APC) is a multifunctional coagulation protease with anticoagulant, antiinflammatory, and cytoprotective activities. Through selective modulation of APC activities, therapeutics can be developed for pathologies associated with these mechanisms. Identification of nanobodies that selectively recognize APC has provided insights into the diversity of APC functions and their potential therapeutic applications. LP11, in particular, has been found to selectively modulate APC anticoagulation and PAR1 cleavage, suggesting its potential in promoting hemostasis and cytoprotection in bleeding disorders.

BLOOD ADVANCES (2023)

Article Hematology

Thrombin-mediated activation of PAR1 enhances doxorubicin-induced cardiac injury in mice

Steven P. Grover, Vanthana Bharathi, Jens J. Posma, John H. Griffin, Joseph S. Palumbo, Nigel Mackman, Silvio Antoniak

Summary: The chemotherapeutic drug doxorubicin is cardiotoxic and can cause irreversible heart failure. In addition, it induces the activation of coagulation. Thrombin-mediated activation of protease-activated receptor 1 (PAR1) has been found to contribute to doxorubicin-induced cardiac injury.

BLOOD ADVANCES (2023)

Article Biology

Analysis of the urinary metabolic profiles in irradiated rats treated with Activated Protein C (APC), a potential mitigator of radiation toxicity

Shivani Bansal, Sunil Bansal, Brian L. Fish, Yaoxiang Li, Xiao Xu, Jose A. Fernandez, John H. Griffin, Heather A. Himburg, Marjan Boerma, Meetha Medhora, Amrita K. Cheema

Summary: The purpose of this study was to investigate longitudinal changes in urinary metabolites after IR exposure and explore the potential alleviation of radiation toxicities through the administration of recombinant APC. Female adult WAG/RijCmcr rats were irradiated and urine samples were collected for LC-MS metabolomics analysis. Different forms of APC were administered to sub-cohorts of rats and the results showed that radiation induced significant changes in urinary profiles, and treatment with rat wildtype-APC or rat 3K3A-APC could alleviate radiation-induced metabolic alterations to some extent.

INTERNATIONAL JOURNAL OF RADIATION BIOLOGY (2023)

Article Biochemistry & Molecular Biology

Urinary Metabolomics for the Prediction of Radiation-Induced Cardiac Dysfunction

Yaoxiang Li, Shivani Bansal, Vijayalakshmi Sridharan, Sunil Bansal, Meth M. Jayatilake, Jose A. Fernandez, John H. Griffin, Marjan Boerma, Amrita K. Cheema

Summary: In this study, the researchers aimed to identify urinary metabolites that can indicate radiation-induced cardiac damage. They analyzed previously collected urine samples and found that radiation caused disturbances in various metabolic pathways, with wild-type mice showing more prominent effects than APCHi mice. By combining genotype and sex, the researchers identified a urinary biomarker panel that can predict heart dysfunction. It is important to note that this study did not use live mice but focused on analyzing previously collected urine samples.

METABOLITES (2023)

Article Biochemistry & Molecular Biology

Changes in Plasma Metabolic Signature upon Acute and Chronic Morphine Administration in Morphine-Tolerant Mice

Naseer A. Kutchy, Amelia Palermo, Rong Ma, Zhong Li, Alexandria Ulanov, Shannon Callen, Gary Siuzdak, Sabita Roy, Shilpa Buch, Guoku Hu

Summary: Morphine administration causes distinct metabolic changes, with acute and chronic use leading to different plasma metabolite concentrations. The alterations in metabolites are linked to the development of tolerance to morphine's analgesic effects. The study also identified metabolites that were differentially affected by acute versus chronic morphine use, suggesting that metabolic changes may be mitigated by prolonged exposure to the drug.

METABOLITES (2023)

Article Health Care Sciences & Services

Students' Perception of Formative Assessment as an Instructional Tool in Competency-Based Medical Education: Proposal for a Proof-of-Concept Study

Farah Otaki, Mandana Gholami, Iman Fawad, Anjum Akbar, Yajnavalka Banerjee

Summary: This study aims to develop and evaluate a problem-solving assessment as an instructional tool for a biochemistry course in a medical program. The results will provide evidence for the application of this assessment in achieving competency goals and fostering self-directed learning, which can be beneficial to other medical educators in similar contexts.

JMIR RESEARCH PROTOCOLS (2023)

Letter Biochemical Research Methods

METLIN-CCS: an ion mobility spectrometry collision cross section database

Erin S. Baker, Corey Hoang, Winnie Uritboonthai, Heino M. Heyman, Brian Pratt, Michael MacCoss, Brendan MacLean, Robert Plumb, Aries Aisporna, Gary Siuzdak

NATURE METHODS (2023)

Editorial Material Endocrinology & Metabolism

Subcellular quantitative imaging of metabolites at the organelle level

Gary Siuzdak

Summary: Recent advances in mass spectrometry imaging, specifically the development of nano secondary ion mass spectrometry, have made subcellular quantitative analysis a reality, allowing for absolute quantification at the organelle level.

NATURE METABOLISM (2023)

Article Health Care Sciences & Services

Efficient Generation of Chondrocytes From Bone Marrow-Derived Mesenchymal Stem Cells in a 3D Culture System: Protocol for a Practical Model for Assessing Anti-Inflammatory Therapies

Rajashree Patnaik, Shirin Jannati, Bala Mohan Sivani, Manfredi Rizzo, Nerissa Naidoo, Yajnavalka Banerjee

Summary: This study developed a novel protocol for generating chondrocytes from bone marrow-derived mesenchymal stem cells (BMSCs) in a 3D culture system, which has significant implications for cartilage biology research and the discovery of potential therapeutic interventions.

JMIR RESEARCH PROTOCOLS (2023)

Letter Hematology

APC-PAR1-R46 signaling limits CXCL1 expression during poly IC-induced airway inflammation in mice

Swati Sharma, Lauryn T. Ursery, Vanthana Bharathi, Stephen D. Miles, Willie A. Williams, Aymen Z. Elzawam, Clare M. Schmedes, Grant J. Egnatz, Jose A. Fernandez, Joseph S. Palumbo, John H. Grif, Nigel Mackman, Silvio Antoniak

JOURNAL OF THROMBOSIS AND HAEMOSTASIS (2023)

No Data Available