Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

(2018) Cristiane P G Calixto et al.   PLANT CELL

MKK6 functions in two parallel MAP kinase cascades in immune signaling

(2018) Kehui Lian et al.   PLANT PHYSIOLOGY

Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses

(2018) Jérémie Bazin et al.   Frontiers in Plant Science

Disruption of the MAMP-induced MEKK1-MKK1/MKK2-MPK4 pathway activates the TNL immune receptor SMN1/RPS6

(2018) Momoko Takagi et al.   PLANT AND CELL PHYSIOLOGY

WRKY transcription factors in plant responses to stresses

(2017) Jingjing Jiang et al.   Journal of Integrative Plant Biology

Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets ofArabidopsisMitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6

(2017) Naganand Rayapuram et al.   MOLECULAR & CELLULAR PROTEOMICS

The Landscape of Isoform Switches in Human Cancers

(2017) Kristoffer Vitting-Seerup et al.   MOLECULAR CANCER RESEARCH

Transcript-level expression control of plant NLR genes

(2017) Yan Lai et al.   MOLECULAR PLANT PATHOLOGY

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

(2017) Runxuan Zhang et al.   NUCLEIC ACIDS RESEARCH

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

A Cysteine-Rich Protein Kinase Associates with a Membrane Immune Complex and the Cysteine Residues Are Required for Cell Death

(2016) Koste A. Yadeta et al.   PLANT PHYSIOLOGY

Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress

(2015) Sergei Filichkin et al.   CURRENT OPINION IN PLANT BIOLOGY

Signaling Mechanisms in Pattern-Triggered Immunity (PTI)

(2015) Jean Bigeard et al.   Molecular Plant

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover

(2014) Jacqueline Monaghan et al.   Cell Host & Microbe

From local to global: CDPKs in systemic defense signaling upon microbial and herbivore attack

(2014) Tina Romeis et al.   CURRENT OPINION IN PLANT BIOLOGY

Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis

(2014) Florian Bardou et al.   DEVELOPMENTAL CELL

Alternative Splicing in Plant Immunity

(2014) Shengming Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of Novel PAMP-Triggered Phosphorylation and Dephosphorylation Events in Arabidopsis thaliana by Quantitative Phosphoproteomic Analysis

(2014) Naganand Rayapuram et al.   JOURNAL OF PROTEOME RESEARCH

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

(2014) Shihao Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Chloroplast Retrograde Signal Regulates Nuclear Alternative Splicing

(2014) E. Petrillo et al.   SCIENCE

Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences

(2014) Nicolas Frei dit Frey et al.   GENOME BIOLOGY

Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome

(2013) G. Drechsel et al.   PLANT CELL

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Disruption of PAMP-Induced MAP Kinase Cascade by a Pseudomonas syringae Effector Activates Plant Immunity Mediated by the NB-LRR Protein SUMM2

(2012) Zhibin Zhang et al.   Cell Host & Microbe

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Emerging role for RNA-based regulation in plant immunity

(2012) Dorothee Staiger et al.   NEW PHYTOLOGIST

Reactive oxygen species and their role in plant defence and cell wall metabolism

(2012) Jose A. O’Brien et al.   PLANTA

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

TheArabidopsisLeucine-Rich Repeat Receptor–Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens

(2011) Milena Roux et al.   PLANT CELL

Virus-Induced Necrosis Is a Consequence of Direct Protein-Protein Interaction between a Viral RNA-Silencing Suppressor and a Host Catalase

(2011) J.-i. Inaba et al.   PLANT PHYSIOLOGY

Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity

(2011) Anna M. Mastrangelo et al.   PLANT SCIENCE

Arabidopsis thaliana WRKY25, WRKY26, and WRKY33 coordinate induction of plant thermotolerance

(2011) Shujia Li et al.   PLANTA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Evidence for Base Excision Repair of Oxidative DNA Damage in Chloroplasts ofArabidopsis thaliana

(2009) Benjamin L. Gutman et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Plant-specific SR-related protein atSR45a interacts with spliceosomal proteins in plant nucleus

(2009) Noriaki Tanabe et al.   PLANT MOLECULAR BIOLOGY

Alternatively spliced transcripts of Pi-ta blast resistance gene in Oryza sativa

(2009) Stefano Costanzo et al.   PLANT SCIENCE

MEKK1, MKK1/MKK2 and MPK4 function together in a mitogen-activated protein kinase cascade to regulate innate immunity in plants

(2008) Minghui Gao et al.   CELL RESEARCH

Site-Specific Phosphorylation Profiling ofArabidopsisProteins by Mass Spectrometry and Peptide Chip Analysis

(2008) Sergio de la Fuente van Bentem et al.   JOURNAL OF PROTEOME RESEARCH

Arabidopsis Mitogen-Activated Protein Kinase Kinases MKK1 and MKK2 Have Overlapping Functions in Defense Signaling Mediated by MEKK1, MPK4, and MKS1

(2008) J.-L. Qiu et al.   PLANT PHYSIOLOGY