ASAP-SML: An antibody sequence analysis pipeline using statistical testing and machine learning

abYsis: Integrated Antibody Sequence and Structure—Management, Analysis, and Prediction

(2017) Mark B. Swindells et al.   JOURNAL OF MOLECULAR BIOLOGY

Advances in Antibody Design

(2015) Kathryn E. Tiller et al.   Annual Review of Biomedical Engineering

ANARCI: antigen receptor numbering and receptor classification

(2015) James Dunbar et al.   BIOINFORMATICS

Matrix metalloproteinases in stem cell regulation and cancer

(2015) Kai Kessenbrock et al.   MATRIX BIOLOGY

Overlapping hotspots in CDRs are critical sites for V region diversification

(2015) Lirong Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inhibition Mechanism of Membrane Metalloprotease by an Exosite-Swiveling Conformational Antibody

(2015) Yael Udi et al.   STRUCTURE

Matrix metalloproteinases in inflammation

(2014) Liisa Nissinen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Wu and Kabat 1970: A Transforming View of Antibody Diversity

(2014) L. E. Hood   JOURNAL OF IMMUNOLOGY

IMGT®, the international ImMunoGeneTics information system® 25 years on

(2014) Marie-Paule Lefranc et al.   NUCLEIC ACIDS RESEARCH

PyIgClassify: a database of antibody CDR structural classifications

(2014) Jared Adolf-Bryfogle et al.   NUCLEIC ACIDS RESEARCH

Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server

(2013) Pier Paolo Olimpieri et al.   BIOINFORMATICS

Comprehensive Interrogation of a Minimalist Synthetic CDR-H3 Library and Its Ability to Generate Antibodies with Therapeutic Potential

(2013) Ciara M. Mahon et al.   JOURNAL OF MOLECULAR BIOLOGY

SAbDab: the structural antibody database

(2013) James Dunbar et al.   NUCLEIC ACIDS RESEARCH

IgBLAST: an immunoglobulin variable domain sequence analysis tool

(2013) Jian Ye et al.   NUCLEIC ACIDS RESEARCH

ABangle: characterising the VH-VL orientation in antibodies

(2013) J. Dunbar et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Matrix metalloproteinases in cancer: their value as diagnostic and prognostic markers and therapeutic targets

(2013) Elin Hadler-Olsen et al.   TUMOR BIOLOGY

Predicting antibody complementarity determining region structures without classification

(2011) Yoonjoo Choi et al.   Molecular BioSystems

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF

(2009) François Ehrenmann et al.   NUCLEIC ACIDS RESEARCH

RosettaAntibody: antibody variable region homology modeling server

(2009) A. Sircar et al.   NUCLEIC ACIDS RESEARCH

PIGS: automatic prediction of antibody structures

(2008) P. Marcatili et al.   BIOINFORMATICS

Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains

(2008) K.R. Abhinandan et al.   MOLECULAR IMMUNOLOGY