Learning Force Fields from Stochastic Trajectories

Stochastic nonlinear dynamics of confined cell migration in two-state systems

(2019) David B. Brückner et al.   Nature Physics

Introduction to dynamical large deviations of Markov processes

(2018) Hugo Touchette   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Nonequilibrium Scaling Behavior in Driven Soft Biological Assemblies

(2018) Federica Mura et al.   PHYSICAL REVIEW LETTERS

Butane dihedral angle dynamics in water is dominated by internal friction

(2018) Jan O. Daldrop et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Broken detailed balance and non-equilibrium dynamics in living systems: a review

(2018) F S Gnesotto et al.   REPORTS ON PROGRESS IN PHYSICS

Entropy production rate is maximized in non-contractile actomyosin

(2018) Daniel S. Seara et al.   Nature Communications

High-performance reconstruction of microscopic force fields from Brownian trajectories

(2018) Laura Pérez García et al.   Nature Communications

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Single-molecule imaging reveals receptor–G protein interactions at cell surface hot spots

(2017) Titiwat Sungkaworn et al.   NATURE

Maximum likelihood estimations of force and mobility from single short Brownian trajectories

(2017) Raphael Sarfati et al.   Soft Matter

Experiments in Stochastic Thermodynamics: Short History and Perspectives

(2017) S. Ciliberto   Physical Review X

Variational estimation of the drift for stochastic differential equations from the empirical density

(2016) Philipp Batz et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Broken Detailed Balance of Filament Dynamics in Active Networks

(2016) J. Gladrow et al.   PHYSICAL REVIEW LETTERS

Discovering governing equations from data by sparse identification of nonlinear dynamical systems

(2016) Steven L. Brunton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Broken detailed balance at mesoscopic scales in active biological systems

(2016) Christopher Battle et al.   SCIENCE

InferenceMAP: mapping of single-molecule dynamics with Bayesian inference

(2015) Mohamed El Beheiry et al.   NATURE METHODS

Inflow rate, a time-symmetric observable obeying fluctuation relations

(2015) Marco Baiesi et al.   PHYSICAL REVIEW E

Thermodynamic Uncertainty Relation for Biomolecular Processes

(2015) Andre C. Barato et al.   PHYSICAL REVIEW LETTERS

Dynamics of CRISPR-Cas9 genome interrogation in living cells

(2015) Spencer C. Knight et al.   SCIENCE

Exact results for a simple epidemic model on a directed network: Explorations of a system in a nonequilibrium steady state

(2014) Maxim S. Shkarayev et al.   PHYSICAL REVIEW E

Optimal estimation of diffusion coefficients from single-particle trajectories

(2014) Christian L. Vestergaard et al.   PHYSICAL REVIEW E

Real-time calibration of a feedback trap

(2014) Momčilo Gavrilov et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

Emergence of macroscopic directed motion in populations of motile colloids

(2013) Antoine Bricard et al.   NATURE

Living Crystals of Light-Activated Colloidal Surfers

(2013) J. Palacci et al.   SCIENCE

Nonparametric estimation of diffusions: a differential equations approach

(2012) O. Papaspiliopoulos et al.   BIOMETRIKA

A Bayesian Inference Scheme to Extract Diffusivity and Potential Fields from Confined Single-Molecule Trajectories

(2012) Silvan Türkcan et al.   BIOPHYSICAL JOURNAL

Noninvasive measurement of dissipation in colloidal systems

(2012) B. Lander et al.   PHYSICAL REVIEW E

Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging

(2012) N. Hoze et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochastic thermodynamics, fluctuation theorems and molecular machines

(2012) Udo Seifert   REPORTS ON PROGRESS IN PHYSICS

Diffusion Estimation from Multiscale Data by Operator Eigenpairs

(2011) Daan Crommelin et al.   MULTISCALE MODELING & SIMULATION

Approaching complexity by stochastic methods: From biological systems to turbulence

(2011) Rudolf Friedrich et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Bacterial strategies for chemotaxis response

(2010) A. Celani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eulerian and Lagrangian Pictures of Non-equilibrium Diffusions

(2009) Raphaël Chetrite et al.   JOURNAL OF STATISTICAL PHYSICS

Many-Body Electrostatic Forces between Colloidal Particles at Vanishing Ionic Strength

(2009) Jason W. Merrill et al.   PHYSICAL REVIEW LETTERS

Fluctuation Relations for Diffusion Processes

(2008) Raphaël Chetrite et al.   COMMUNICATIONS IN MATHEMATICAL PHYSICS

Steady state statistics of driven diffusions

(2008) Christian Maes et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Influence of Nonconservative Optical Forces on the Dynamics of Optically Trapped Colloidal Spheres: The Fountain of Probability

(2008) Yohai Roichman et al.   PHYSICAL REVIEW LETTERS

Dimensionality and Dynamics in the Behavior of C. elegans

(2008) Greg J. Stephens et al.   PLoS Computational Biology