Article
Environmental Sciences
Hiroki Kise, Akira Iguchi, Naoki Saito, Yuki Yoshioka, Koji Uda, Tomohiko Suzuki, Atsushi J. Nagano, Atsushi Suzuki, Nozomu Iwasaki
Summary: The genetic population structure of Corallium japonicum in the Northwest Pacific was examined using RAD-seq. Gene flow was found to be widespread, but larval dispersal simulations revealed limited gene flow between certain populations. The findings of this study provide valuable information for the effective management of C. japonicum.
FRONTIERS IN MARINE SCIENCE
(2023)
Article
Plant Sciences
Sompong Chankaew, Sasiprapa Sriwichai, Teppratan Rakvong, Tidarat Monkham, Jirawat Sanitchon, Sithichoke Tangphatsornruang, Wasitthee Kongkachana, Chutima Sonthirod, Wirulda Pootakham, Kitiya Amkul, Anochar Kaewwongwal, Kularb Laosatit, Prakit Somta
Summary: This study developed a high-density linkage map of the winged bean and identified QTLs for pod and seed-related traits. These findings are valuable for molecular breeding of winged beans.
Article
Agriculture, Dairy & Animal Science
Chuyang Mao, Tao Zhang, Anyong Ren, Xianbo Jia, Song-Jia Lai, Shi-Yi Chen
Summary: The Liangshan cattle, a small indigenous breed with high genetic diversity, are mainly distributed in southwestern Sichuan, China, and considered a valuable genetic resource.
ANIMAL BIOTECHNOLOGY
(2021)
Article
Plant Sciences
Nahuel E. Palombo, Carolina Carrizo Garcia
Summary: A genomic approach was used to study the evolutionary history and genetic diversity of the locoto chile, revealing differentiation and geographic structuration across South and Central America. The study identified the highest levels of diversity among individuals in central-western Bolivia.
Article
Fisheries
Sajad Nazari, Majidreza Khoshkholgh, J. Antonio Baeza
Summary: The comparative analysis of the gonads transcriptomes of the narrow-clawed crayfish Pontastacus leptodactylus revealed a large number of sex-differentiation related genes, with some male-related genes significantly up-regulated. Additionally, a substantial amount of potential simple sequence repeats and single nucleotide polymorphisms were detected in the study.
AQUACULTURE REPORTS
(2022)
Article
Zoology
Martin Blaha, Jiri Patoka, Tomas Policar, Karolina Sliwinska, Anatoly Alekhnovich, Nadezhda Berezina, Ana-Maria Petrescu, Levan Mumladze, Andras Weiperth, Misel Jelic, Pavel Kozak, Ivana Maguire
Summary: This study confirmed the presence of three distinct mtDNA phylogroups in Pontastacus leptodactylus species, corresponding to Central and Southern Europe, Eastern Europe and Asia, and Turkey, through the analysis of individuals from 65 populations and 14 countries using mtDNA and nuDNA. The Black Sea basin was identified as the most likely area of origin based on ancestral range analysis. Mitonuclear discordance indicated the existence of a single species, raising the possibility of taxonomic inaccuracy within the P. leptodactylus species complex.
ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
(2023)
Article
Fisheries
Ane del Rio Lavin, Natalia Diaz-Arce, Maria Angelica Larrain, Cristian Araneda, Naiara Rodriguez-Ezpeleta, Elisa Jimenez, Miguel Angel Pardo
Summary: Seafood traceability is important for regulators and fishing industries to prevent fraud and ensure consumer safety. This study used genetic markers to trace the genetic structure of Mediterranean mussel and assess the ability of new markers to trace the origin of samples. The results showed clear differentiation between populations from different regions and suggested the potential for developing an accurate and cost-effective traceability tool.
Article
Biochemistry & Molecular Biology
Karin Rengefors, Raphael Gollnisch, Ingrid Sassenhagen, Karolina Harnstrom Aloisi, Marie Svensson, Karen Lebret, Dora Certnerova, William A. Cresko, Susan Bassham, Dag Ahren
Summary: The study investigated the genetic structure and dispersal pathways of G. semen using RAD tag sequencing. It revealed a distinct population genetic structure with western and eastern populations likely representing different lineages. Despite significant genetic differentiation among lakes, there was limited isolation by distance, and gene flow was observed from the northeast/east towards the southwest/west. This suggests that migratory birds may act as dispersal vectors for G. semen propagules.
Article
Ecology
Luis Albero, Inigo Martinez-Solano, Miguel Hermida, Manuel Vera, Pedro Tarroso, Eloy Becares
Summary: This study assessed the functional connectivity of the sharp ribbed newt populations in an agricultural landscape in NW Spain. The results showed that open areas, such as rainfed crops and grasslands, play an important role in promoting gene flow and functional connectivity between amphibian populations. Conservation policies should adopt a functional network strategy to protect interconnected temporary ponds across the traditional agricultural matrix.
Article
Biology
Justyna Zabicka, Tom Kirschey, Grzegorz Migdalek, Aneta Slomka, Elzbieta Kuta
Summary: The wetland violets of Central and Northern Europe are endangered due to global climatic changes and the formation of interspecific hybrids. The study finds that V. pubifolia is not a separate species but falls within the range of variation of V. palustris. It also suggests that the low genetic differentiation and heterozygosity of V. epipsila in Europe may lead to its reduced tolerance and possible extinction.
Article
Plant Sciences
Muhammad Ahmad, Thibault Leroy, Nikos Krigas, Eva M. M. Temsch, Hanna Weiss-Schneeweiss, Christian Lexer, Eva Maria Sehr, Ovidiu Paun
Summary: Analysis of genetic data in Greek populations of Alkanna tinctoria revealed a strong genetic structure driven mainly by neutral processes, with a significant but minor role of selection. The revealed natural genomic variation can be used to predict variation in bioactive compound production, and the bioinformatics approach employed in this study may prove useful for studying other non-model polyploid species.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Plant Sciences
Zhenyu Dang, Jixuan Yang, Lin Wang, Qin Tao, Fengjun Zhang, Yuxin Zhang, Zewei Luo
Summary: The new sequencing technology allows for identification of genome-wide sequence-based variants at a population level at a competitive low cost, while modeling the sampling variation of sequence data can aid in downstream analysis.
Article
Plant Sciences
Supaporn Khanbo, Wasitthee Kongkachana, Nukoon Jomchai, Salisa Charoensri, Chartree Maknual, Pasin Maprasop, Nawin Phormsin, Sithichoke Tangphatsornruang, Wirulda Pootakham
Summary: This study explored the genetic diversity and population structure of Bruguiera cylindrica populations in Thailand using SNP markers. The results revealed a low level of genetic diversity and a population structure that corresponds to geographical regions.
Article
Food Science & Technology
Carmen E. Vargas-Peralta, Cristian Araneda, Clara E. Galindo-Sanchez, M. Angelica Larrain, Miguel A. Del Rio-Portilla, Fabiola Lafarga-De La Cruz
Summary: This study analyzed the genetic data of five abalone species using RAD-seq and developed markers for traceability and specimen identification, providing a basis for fishery management measures in abalone trade.
Article
Biochemistry & Molecular Biology
Luisa Abruzzi De Oliveira-Busatto, Cecilia Paz da Silva Giordano, Marilia Ferreira da Silva, Darci Uhry Junior, Frank Guzman, Beatriz Wiebke-Strohm, Zenglu Li, Christian Bredemeier, Maria Helena Bodanese-Zanettini
Summary: Flooding is a common environmental stress that affects soybean growth and yield. This study focused on characterizing the physiological responses and identifying differentially expressed genes in Brazilian soybean genotypes with contrasting flooding tolerance. SNPs related to flooding tolerance were also identified. This research provides valuable information for developing soybean genotypes adapted to poorly drained soils or areas subject to flooding.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Marine & Freshwater Biology
Majidreza Khoshkholgh, Sajad Nazari
JOURNAL OF CRUSTACEAN BIOLOGY
(2019)
Article
Mathematics
Ali R. Aliabad, Mehdi Badie, Sajad Nazari
HACETTEPE JOURNAL OF MATHEMATICS AND STATISTICS
(2020)
Article
Mathematics
Themba Dube, Mojtaba Ghirati, Sajad Nazari, Ali Taherifar
ALGEBRA UNIVERSALIS
(2020)
Article
Computer Science, Information Systems
Willem Conradie, Sabine Frittella, Krishna Manoorkar, Sajad Nazari, Alessandra Palmigiano, Apostolos Tzimoulis, Nachoem M. Wijnberg
Summary: The paper proposes a novel way to unify Rough Set Theory and Formal Concept Analysis, drawing from results and insights in the algebraic theory of modal logic. It is based on the idea that Pawlak's original approximation spaces can be seen as special instances of enriched formal contexts, i.e. relational structures based on formal contexts from Formal Concept Analysis.
INFORMATION SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Sajad Nazari, Mohammad Pourkazmi
Summary: In this study, 52 novel single nucleotide polymorphism (SNP) markers for Rainbow trout (Onchorhynchus mykiss) were discovered and validated, which could be useful for future genetic studies and breeding programs. The findings suggest that these markers are important for detecting adaptive signals and parentage assignment, and can also contribute to improving economic traits and management of the species.
MOLECULAR BIOLOGY REPORTS
(2021)
Article
Fisheries
Esmaeil Kazemi, Sajad Nazari, Iman Sourinejad, Mohammad Pourkazemi, Hamed Paknejad, Khalil Eslamloo
Summary: The study aimed to investigate the effects of different sources of zinc supplements on serum enzymatic activities, gene expressions related to antioxidant and immunity in rainbow trout. Results showed that mineral zinc and organic zinc supplements significantly enhanced antioxidant and immune responses in rainbow trout. Dietary sources of zinc had an impact on enzyme activities and gene expressions, indicating potential benefits for fish health.
AQUACULTURE INTERNATIONAL
(2021)
Article
Biochemistry & Molecular Biology
Habibollah Gandomkar, Seyed Pezhman Hosseini Shekarabi, Hossein Ali Abdolhay, Sajad Nazari, Mehdi Shamsaie Mehrgan
Summary: This study identified 36 novel polymorphic microsatellite markers and analyzed the population genetic structure of Capoeta aculeata sampled from three geographical sites in Iran using next generation sequencing technology. The results showed potential for these markers to be valuable tools for future population and conservation genetics studies of C. aculeata and related species.
MOLECULAR BIOLOGY REPORTS
(2021)
Article
Fisheries
Sajad Nazari, Mohammad Pourkazemi, Hamed Paknejad, Esmaeil Kazemi, Mostafa Ghaderi, Khalil Eslamloo
Summary: This study investigated the effects of different sources of zinc supplements on the transcriptome profiling of male rainbow trout broodstocks. The results revealed a strong inhibitory effect of mineral zinc supplement on the gene expression of O. mykiss.
Article
Agriculture, Dairy & Animal Science
Amin Mortazavi, Mostafa Ghaderi-Zefrehei, Mustafa Muhaghegh Dolatabady, Mahdi Golshan, Sajad Nazari, Ayeh Sadat Sadr, Saeid Kadkhodaei, Ikhide G. Imumorin, Sunday O. Peters, Jacqueline Smith
Summary: This study used integrative bioinformatics to investigate biochemical phenomena and gene interactions in the zebrafish transcriptome, and provided a user-friendly pipeline to explore crucial transcriptional insights from zebrafish starvation-induced transcriptome data. Several hub genes affecting gene expression in the liver of starving zebrafish were identified. These findings have important implications for zebrafish genomic studies.
Article
Fisheries
Mahdieh Rahbar, Majidreza Khoshkholgh, Sajad Nazari
Summary: The study used RAD-seq approach to investigate the genetic variability and population structure of Caspian kutum populations in Iran. The results revealed significant genetic variation and identified several SNP markers that can be used for monitoring and understanding the genetic variation in this endangered species.
FISHERIES RESEARCH
(2023)
Article
Mathematics
A. R. Aliabad, M. Badie, S. Nazari
Summary: By studying and using the quasi-pure part concept, this article improves some statements and provides characterizations of Gelfand rings. Moreover, it explores the relationship between Gelfand rings, their maximal ideals, and specific spaces.
JOURNAL OF MATHEMATICAL EXTENSION
(2022)
Article
Fisheries
M. Harsij, H. Paknejad, M. Khalili, H. Jafarian, S. Nazari
Summary: This study investigated the impact of zinc oxide nanoparticles on goldfish, showing severe lesions in the gill and liver tissues of goldfish after exposure to these nanoparticles. The expression of Hsp70 significantly increased and exhibited a relatively similar pattern in both gill and liver tissues of goldfish, indicating potential health risks and the need for further evaluation of its toxic effects.
IRANIAN JOURNAL OF FISHERIES SCIENCES
(2021)
Article
Fisheries
S. Nazari, H. Paknejad, A. Jalali, Z. Khorshidi
Summary: The study conducted a comprehensive molecular assessment of freshwater fishes in Iran by analyzing COI gene sequences of cypriniform fishes, revealing genetic structure and relationships among different species.
IRANIAN JOURNAL OF FISHERIES SCIENCES
(2021)
Article
Fisheries
S. Nazari, M. Pourkazemi, M. R. Khoshkholgh
IRANIAN JOURNAL OF FISHERIES SCIENCES
(2020)
