Article
Biochemistry & Molecular Biology
Yasukiyo Yoshioka, Ryunoshin Kono, Masaki Kuse, Yoko Yamashita, Hitoshi Ashida
Summary: This study investigated the active compounds in Myristica fragrans and their mechanism in promoting glucose uptake. The researchers found that myristicin, licarin B, ADDP, and ADTP were the active compounds that promoted GLUT4 translocation. Oral administration of Myristica fragrans extract suppressed post-prandial hyperglycemia in mice. Therefore, Myristica fragrans shows promise as a functional food for preventing post-prandial hyperglycemia and type 2 diabetes mellitus.
Article
Immunology
Xiongfeng Pan, Atipatsa C. Kaminga, Sanjay Kinra, Shi Wu Wen, Hongying Liu, Xinrui Tan, Aizhong Liu
Summary: This study summarized the associations of different chemokines with T1DM, revealing that circulating concentrations of CCL5 and CXCL1 were significantly higher in T1DM patients compared to controls. Circulating CCL5 ranked highest among all the chemokines investigated in T1DM.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Shangming Liu, Jiahui Gao, Linhao He, Zhenwang Zhao, Gang Wang, Jin Zou, Li Zhou, Xiangjun Wan, Shilin Tang, Chaoke Tang
Summary: Myristica fragrans has been shown to promote cholesterol efflux from macrophages, reduce intracellular cholesterol accumulation, and modulate lipid metabolism and inflammation through the GATA3, LXR alpha, and ABCA1 pathways, indicating its potential therapeutic efficacy in atherosclerotic cardiovascular disease.
ACTA BIOCHIMICA ET BIOPHYSICA SINICA
(2021)
Article
Cell Biology
Luiz A. D. Queiroz, Josiane B. Assis, Joao P. T. Guimaraes, Emanuella S. A. Sousa, Analia C. Milhomem, Karen K. S. Sunahara, Anderson Sa-Nunes, Joilson O. Martins
Summary: Alloxan (ALX) and streptozotocin (STZ) are commonly used to induce type 1 diabetes in animal models, but they lead to different immune responses. STZ-induced diabetes showed significant immune cell parameter changes in vivo and in vitro early in the disease, while ALX-induced diabetes resulted in alterations predominantly in the chronic phase, leading to increased mortality rates.
MEDIATORS OF INFLAMMATION
(2021)
Article
Endocrinology & Metabolism
Annika Vestergaard Kvist, Mohamad I. Nasser, Peter Vestergaard, Morten Frost, Andrea M. Burden
Summary: A study in Denmark from 1997 to 2017 found that the incidence rates of fractures were higher in patients with type 1 and type 2 diabetes compared to those without diabetes, except for foot fractures. The incidence of hip fractures decreased by 35.2%, 47.0%, and 23.4% in patients with type 1 diabetes, type 2 diabetes, and without diabetes, respectively, over the last 5 years. However, vertebral fractures increased by 14.8%, 18.5%, and 38.9% in the same groups. After age adjustment, patients with type 1 diabetes still had a higher risk of fractures compared to those without diabetes, while patients with type 2 diabetes had a risk similar to those without diabetes.
Article
Biochemistry & Molecular Biology
Ramya Perumalsamy, Lavanya Krishnadhas
Summary: This study synthesized silver nanoparticles from Myristica fragrans seeds and evaluated their anti-diabetic properties, demonstrating that these nanoparticles have therapeutic potential for the treatment of diabetes mellitus.
APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
(2022)
Article
Endocrinology & Metabolism
Xuan Chen, Alison H. Affinati, Yungchun Lee, Adina F. Turcu, Norah Lynn Henry, Elena Schiopu, Angel Qin, Megan Othus, Dan Clauw, Nithya Ramnath, Lili Zhao
Summary: This study found that the risk of developing ICI-T1DM is associated with the type of ICI therapy, patient age, and preexisting non-T1DM diabetes. The development of ICI-T1DM does not seem to significantly impact patient survival.
Article
Endocrinology & Metabolism
Robert French, Dylan Kneale, Justin T. Warner, Holly Robinson, James Rafferty, Adrian Sayers, Peter Taylor, John W. Gregory, Colin M. Dayan
Summary: There is no strong evidence to suggest a significant association between type 1 diabetes and educational outcomes. However, the level of blood glucose control (HbA(1c)) is related to academic achievements.
Article
Endocrinology & Metabolism
Emil F. Coccaro, Sophie Lazarus, Joshua Joseph, Kathline Wyne, Tina Drossos, Louis Phillipson, Mary de Groot
Summary: The study found that negative emotional experience is positively related to diabetes-related distress, while the skill at regulating these emotions is negatively related to diabetes-related distress, with a medium-size relationship between these emotional regulation variables and diabetes-related distress. The data suggest that diabetes-related distress in adults with diabetes is meaningfully linked to negative emotionality and skill at regulating such emotions, with a stronger relationship than perceived psychological stress or diabetes self-care.
Article
Cell & Tissue Engineering
Yanju Li, Feiqing Wang, Huiling Liang, Dongxin Tang, Mei Huang, Jianing Zhao, Xu Yang, Yanqing Liu, Liping Shu, Jishi Wang, Zhixu He, Yang Liu
Summary: The meta-analysis included 10 studies with a total of 239 participants, evaluating the efficacy of mesenchymal stem cells (MSCs) therapy in treating diabetes mellitus. The results showed that MSC treatment led to significantly lower HbA1c levels, higher fasting C-peptide levels, and reduced insulin requirement in T1DM patients.
STEM CELL RESEARCH & THERAPY
(2021)
Review
Biochemistry & Molecular Biology
Stephen T. O'Brien, Orla M. Neylon, Timothy O'Brien
Summary: Cardiovascular disease is the leading cause of death in Type 1 Diabetes, with the molecular basis for atherosclerosis heavily influenced by hyperglycaemia. Current tools for assessing CVD risk in Type 1 Diabetes patients are limited, posing challenges for selecting appropriate lipid-lowering therapies. Best practice guidance for managing dyslipidaemia in Type 1 Diabetes is mainly based on evidence from Type 2 Diabetes patients and expert opinions.
Article
Cardiac & Cardiovascular Systems
Araz Rawshani, Naveed Sattar, Darren K. McGuire, Oskar Wallstrom, Ulf Smith, Jan Boren, Goran Bergstrom, Elmir Omerovic, Annika Rosengren, Bjorn Eliasson, Deepak L. Bhatt, Aidin Rawshani
Summary: The study found that the incidence of valvular disease is increasing among patients with diabetes. In type 2 diabetes, systolic blood pressure, body mass index, and renal function were found to be associated with valvular lesions.
Article
Biochemistry & Molecular Biology
Martina Brunner, Othmar Moser, Reingard Raml, Maximilian Haberlander, Beate Boulgaropoulos, Barbara Obermayer-Pietsch, Eva Svehlikova, Thomas R. Pieber, Harald Sourij
Summary: Methods for glucagon analysis in the past were not specific and had a narrow sensitivity range, leading to inaccurate results. Newer methods have shown that actual glucagon levels are lower than previously thought. This study compared glucagon levels in healthy individuals and diabetes patients using two different methods and found that the choice of method can significantly affect the results.
Review
Biochemistry & Molecular Biology
Andrea Piccioni, Federico Rosa, Sergio Mannucci, Federica Manca, Giuseppe Merra, Sabrina Chiloiro, Marcello Candelli, Marcello Covino, Antonio Gasbarrini, Francesco Franceschi
Summary: This article focuses on the relationship between alterations in the gut microbiome and the onset of type 1 diabetes mellitus and LADA, based on the latest evidence. It discusses the crucial role of the gut microbiota in the pathogenesis of these disorders and explores how modulating the gut microbiota through probiotics, prebiotics, and fecal microbiota transplantation can lead to potential therapeutic strategies.
Article
Biochemistry & Molecular Biology
Aditi R. Saxena, Donal N. Gorman, Ryan M. Esquejo, Arthur Bergman, Kristin Chidsey, Clare Buckeridge, David A. Griffith, Albert M. Kim
Summary: In this study, danuglipron showed good tolerability in T2D patients, with a safety profile consistent with the mechanism of action of GLP-1R agonism.
Article
Biochemistry & Molecular Biology
Archi Sundar Paul, Rajib Islam, Md Rimon Parves, Abdulla Al Mamun, Imrul Shahriar, Md Imran Hossain, Md Nayeem Hossain, Md Ackas Ali, Mohammad A. Halim
Summary: This study highlights the importance of the main protease (Mpro) of SARS-CoV-2 in viral replication and transcription, and suggests that targeting this protease can lead to the development of effective drugs. The researchers screened cysteine-focused ligands and identified candidates that strongly interacted with key residues of Mpro. Covalent docking and molecular dynamics simulation were performed to validate the interactions. The results showed that ligands containing acrylonitrile and amide warheads performed well and were predicted to be safer inhibitors. Overall, this study provides valuable insights for designing an effective drug for COVID-19 treatment.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2022)
Article
Biochemistry & Molecular Biology
Rumana Mahtarin, Shafiqul Islam, Md. Jahirul Islam, M. Obayed Ullah, Md Ackas Ali, Mohammad A. Halim
Summary: In this study, the 3D structure of the SARS-CoV-2 membrane protein was modeled using template-free modeling approaches. The trRosetta server provided the most accurate model compared to other methods. Molecular dynamics simulations and analysis were performed to study the protein's behavior in a membrane environment. The study identified interacting residues and predicted potential drug and peptide binding sites.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2022)
Article
Biochemistry & Molecular Biology
Shafi Mahmud, Md. Jahirul Islam, Md. Rimon Parves, Md. Arif Khan, Lamiya Tabussum, Sinthyia Ahmed, Md. Ackas Ali, Sayo O. Fakayode, Mohammad A. Halim
Summary: This study aimed to identify potent inhibitors of P-glycoprotein using computational approaches. Two compounds showed promising anti-tumor activity with acceptable pharmacokinetic properties, and molecular docking and dynamics simulations verified their stable binding with P-glycoprotein. Principal component analysis and QSAR modeling provided insights into the interactions and predictive capabilities of the drug candidates.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2022)
Article
Biochemistry & Molecular Biology
Anika Tajrian Khan, Golam Mahmud Chowdhury, Juwairiyah Hafsah, Md Maruf, Md Riyad Hossen Raihan, Md Talha Chowdhury, Nafisa Nawal, Nishat Tasnim, Pranto Saha, Prottoy Roy, Raya Tabassum, Souvick Patrick Rodrigues, Walid Hasan, Zarin Tasnim Samanta, Suprio Kamal, Md Shahoriar Nazir, Md Ackas Ali, Mohammad A. Halim
Summary: The study involved screening 14 HIV protease peptides against the main protease of SARS-CoV-2, with HIP1079 showing the best performance. Fourteen middle and high school student researchers were trained on computational tools, enhancing their understanding of multidisciplinary research in biology and chemistry.
BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION
(2022)
Article
Chemistry, Medicinal
Md Josim Uddin, Immacolata Faraone, Md Anwarul Haque, Md Mahbubur Rahman, Mohammad A. Halim, Frank D. Soennichsen, Serhat Sezai Cicek, Luigi Milella, Christian Zidorn
Summary: Fourteen flavones, including polymethoxylated flavones, proanthocyanidins, a benzoyl glucoside, a triterpenoid, and a phenylpropanoid, were isolated from the leaves of the South Asian medicinal plant Ceriscoides campanulata. These compounds showed various activities, including anti-inflammatory, anti-tumor, and anti-diabetic effects.
Article
Biochemistry & Molecular Biology
Abdulla Al Mamun, Farjana Akter, Maksud Khan, Sayeda Samina Ahmed, Md Giash Uddin, Nabila Tabassum Tasfia, Faiyaz Md. Efaz, Md Ackas Ali, Mossammad Umme Chand Sultana, Mohammad A. Halim
Summary: This study identified three potential TMPRSS2 inhibitors that interact significantly with TMPRSS2 and have an 80% accuracy in predicting binding energy.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2022)
Article
Chemistry, Physical
Md Ariful Haque, Md Khalid Bin Islam, Shamim Mahbub, Javed Masood Khan, Jakir Hossian, Md Anamul Hoque, Mohammad A. Halim, Mohammad Majibur Rahman, Anis Ahmad, Mohammad Z. Ahmed
Summary: The micellization behavior of SDS and AY dye mixture was investigated in various media, revealing that the presence of AY dye hindered micellization. The cmc values exhibited a complex relationship with temperature and solvents used, indicating the sensitivity of the system to these parameters.
JOURNAL OF MOLECULAR LIQUIDS
(2022)
Article
Chemistry, Physical
Mossammad U. C. Sultana, Md Giash Uddin, Md Billal Hossain, Md Ackas Ali, Zannatul Ferdous Sonia, Suprio Kamal, Mohammad A. Halim
Summary: This study investigated the interaction between ivermectin and its analogues with Imp alpha/beta 1 heterodimer, revealing that the ivermectin dimer showed the highest binding affinity. Molecular dynamics simulations confirmed the good structural stability of the complex, with most residues remaining stable throughout the simulation period.
MOLECULAR SIMULATION
(2022)
Article
Chemistry, Physical
Muhammad Omor Faruk Patwary, M. Mahbubur Rahman, Md Khalid Bin Islam, Md Ackas Ali, Mohammad A. Halim, Farid Ahmed
Summary: This study investigates the non-bonding interaction between graphene oxide and small molecules such as NO2, SO3, SO2, and CO2 using density functional theory-based vibrational circular dichroism (VCD) and Raman spectroscopies. The results show significant changes in VCD signals for different small molecules interacting with graphene oxide, while there is no significant impact on the Raman signals.
COMPUTATIONAL AND THEORETICAL CHEMISTRY
(2022)
Article
Chemistry, Analytical
Li-Xue Jiang, Logan D. Plath, Mohammad A. Halim, Stephan Friedrich, Mark E. Bier
Summary: Cryogenic superconducting tunnel junction (STJ) detectors have the advantages of high sensitivity, high quantum efficiency, low noise, and the ability to detect the time and relative energy of deposited ions. By coupling STJ cryodetectors with mass spectrometers, protein ions can be resolved in terms of charge state, multimerization, and fragmentation. The determination of fragment mass is achieved by measuring the differences in ion deposition energy, without knowing the charge state of the fragment.
ANALYTICAL CHEMISTRY
(2022)
Article
Chemistry, Physical
Md Sajjadur Rahman, Jennifer Kyeremateng, Mousumi Saha, Sampson Asare, Nizam Uddin, Mohammad A. Halim, Douglas E. Raynie
Summary: This study investigates the mechanism of water in the formation of deep eutectic solvents using experimental and computational techniques. Quantum chemical and radial distribution function calculations successfully reveal the interactions and contributions among the components. Hydrogen bonds play a crucial role in the formation of water-based deep eutectic solvents. These solvents exhibit higher solubilities and show potential applications in biological systems.
JOURNAL OF MOLECULAR LIQUIDS
(2022)
Article
Chemistry, Multidisciplinary
Iktedar Mahdi, Humyara Yeasmin, Imtiaz Hossain, Raina Masnoon Badhan, Md Ackas Ali, Md Abdul Kaium, Rajib Islam, Md Abu Sufian, Mohammad A. Halim
Summary: This research screened 21 antiviral peptides against nucleoprotein of SARS-CoV-2 and identified AVP1155 as the most promising candidate. The study found that AVP1155 exhibited superior performance in terms of binding with nucleoprotein compared to other peptides.
Article
Biochemistry & Molecular Biology
Shaila Akter, Md. Jahirul Islam, Md. Ackas Ali, Md. Zakaria Tashrif, Md. Jaish Uddin, M. Obayed Ullah, Mohammad A. Halim
Summary: This study investigates the dynamic behavior of the full-sequence homology model of ORF3a and compares it with the cryo-EM structure using molecular dynamics simulations. The results show that the model structure exhibits higher stability and compactness compared to the cryo-EM structure. Additionally, the study reveals a correlation between the model structure and the stability of drug interactions.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)
Article
Biochemistry & Molecular Biology
Shafiqul Islam, Md. Rimon Parves, Md. Jahirul Islam, Md Ackas Ali, Faiyaz Md. Efaz, Md. Shahadat Hossain, M. Obayed Ullah, Mohammad A. A. Halim
Summary: In this study, the L84S and L84A mutations in the ORF8 protein of SARS-CoV-2 were found to affect the dimeric structure and interactions with host components and immune responses. Molecular dynamics simulations revealed changes in the conformation and stability of the protein caused by these mutations. These findings provide insights for the development of structure-based therapeutics against SARS-CoV-2.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)
Article
Biochemistry & Molecular Biology
Md. Jahirul Islam, Md. Siddik Alom, Md. Shahadat Hossain, Md Ackas Ali, Shaila Akter, Shafiqul Islam, M. Obayed Ullah, Mohammad A. Halim
Summary: This study used molecular dynamics simulations to investigate the structural changes caused by mutations in the ORF3a protein of SARS-CoV-2. The Q57H and Q57A mutations were found to significantly alter the dimer conformation, narrowing the ion channel cavity and reducing permeability to Na+ and K+. The Q57H mutation also increased the flexibility of the TM3 domain, which can impact the virus's adaptation, virulence, transmission, and immune system evasion.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)