Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)

The complete chloroplast genome of Scutellaria indica var. coccinea (Lamiaceae), an endemic taxon in Korea

(2019) Yoonkyung Lee et al.   Mitochondrial DNA Part B-Resources

Isodon hsiwenii (Lamiaceae: Nepetoideae), A New Species From Yunnan, China

(2019) Ya-Ping Chen et al.   SYSTEMATIC BOTANY

Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia

(2018) Guo-Xiong Hu et al.   ANNALS OF BOTANY

Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae

(2018) Benoît Boachon et al.   Molecular Plant

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Molecular systematics of Caryopteris (Lamiaceae) and its allies with reference to the molecular phylogeny of subfamily Ajugoideae

(2018) Chun-Lei Xiang et al.   TAXON

Chloroplast genomes of Byrsonima species (Malpighiaceae): comparative analysis and screening of high divergence sequences

(2018) Alison P. A. Menezes et al.   Scientific Reports

Sequencing and Analysis of Strobilanthes cusia (Nees) Kuntze Chloroplast Genome Revealed the Rare Simultaneous Contraction and Expansion of the Inverted Repeat Region in Angiosperm

(2018) Haimei Chen et al.   Frontiers in Plant Science

Westwards and northwards dispersal of Triosteum himalayanum (Caprifoliaceae) from the Hengduan Mountains region based on chloroplast DNA phylogeography

(2018) Hai-rui Liu et al.   PeerJ

Phylogenetic relationships in Iranian Scutellaria (Lamiaceae) based on nuclear ribosomal ITS and chloroplast trnL-F DNA data

(2018) Keivan Safikhani et al.   PLANT SYSTEMATICS AND EVOLUTION

Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

(2018) Xiaoyang Gao et al.   BMC GENOMICS

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics

(2017) Shu-Dong Zhang et al.   NEW PHYTOLOGIST

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Phylogeny of the Neotropical sages (Salvia subg. Calosphace; Lamiaceae) and insights into pollinator and area shifts

(2017) Itzi Fragoso-Martínez et al.   PLANT SYSTEMATICS AND EVOLUTION

Salvia united: The greatest good for the greatest number

(2017) BryanT. Drew et al.   TAXON

Two new subfamilies in Lamiaceae

(2017) BO LI et al.   Phytotaxa

Primers for Castilleja and their Utility Across Orobanchaceae: I. Chloroplast Primers

(2017) Maribeth Latvis et al.   Applications in Plant Sciences

The Chloroplast Genome Sequence of Scutellaria baicalensis Provides Insight into Intraspecific and Interspecific Chloroplast Genome Diversity in Scutellaria

(2017) Dan Jiang et al.   Genes

A new species of Scutellaria (Scutellarioideae, Lamiaceae) from Sichuan Province in southwest China

(2017) Fei Zhao et al.   PeerJ

The quest to resolve recent radiations: Plastid phylogenomics of extinct and endangered Hawaiian endemic mints (Lamiaceae)

(2016) Andreanna J. Welch et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships, character evolution and biogeographic diversification of Pogostemon s.l. (Lamiaceae)

(2016) Gang Yao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Phylogeny of non-monophyletic Teucrium (Lamiaceae: Ajugoideae): Implications for character evolution and taxonomy

(2016) Yasaman Salmaki et al.   TAXON

The complete chloroplast genome sequences of Pogostemon stellatus and Pogostemon yatabeanus (Lamiaceae)

(2016) Dong-Keun Yi et al.   Mitochondrial DNA Part B-Resources

A large-scale chloroplast phylogeny of the Lamiaceae sheds new light on its subfamilial classification

(2016) Bo Li et al.   Scientific Reports

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome

(2015) Alison Gonçalves Nazareno et al.   PLoS One

Why Africa matters: evolution of Old World Salvia (Lamiaceae) in Africa

(2014) Maria Will et al.   ANNALS OF BOTANY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Phylogeny and historical biogeography of Isodon (Lamiaceae): Rapid radiation in south-west China and Miocene overland dispersal into Africa

(2014) Xiang-Qin Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic placement of the enigmatic genus Holocheila (Lamiaceae) inferred from plastid DNA sequences

(2014) Ya-Ping Chen et al.   TAXON

The complete chloroplast genome of Origanum vulgare L. (Lamiaceae)

(2013) Brigitte Lukas et al.   GENE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2013) Jun Qian et al.   PLoS One

Phylogenetics, biogeography, and staminal evolution in the tribe Mentheae (Lamiaceae)

(2012) Bryan T. Drew et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Diversification, Biogeographic Pattern, and Demographic History of Taiwanese Scutellaria Species Inferred from Nuclear and Chloroplast DNA

(2012) Yu-Chung Chiang et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

DNA Barcodes for Discriminating the Medicinal Plant Scutellaria baicalensis (Lamiaceae) and Its Adulterants

(2011) Xiaorong Guo et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants

(2011) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impacts of recent cultivation on genetic diversity pattern of a medicinal plant, Scutellaria baicalensis (Lamiaceae)

(2010) Qing-Jun Yuan et al.   BMC GENETICS

Seed Plant Endemism on Hainan Island: A Framework for Conservation Actions

(2010) Javier Francisco-Ortega et al.   BOTANICAL REVIEW

Phylogenetic relationships among subgenera, species, and varieties of Japanese Salvia L. (Lamiaceae)

(2010) Atsuko Takano et al.   JOURNAL OF PLANT RESEARCH

Morphological and genetic differentiation inIsodon umbrosusby altitudinal variation in bumblebee pollinator assemblages

(2010) IKUMI DOHZONO et al.   PLANT SPECIES BIOLOGY

Phylogeny of Isodon (Schrad. ex Benth.) Spach (Lamiaceae) and Related Genera Inferred from Nuclear Ribosomal ITS, trnL–trnF Region, and rps16 Intron Sequences and Morphology

(2010) Jin-Shun Zhong et al.   SYSTEMATIC BOTANY

Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants

(2009) MICHELLE L. HOLLINGSWORTH et al.   Molecular Ecology Resources

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY