Attentive gated neural networks for identifying chromatin accessibility

DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning

(2019) Wenran Li et al.   NUCLEIC ACIDS RESEARCH

DeepACLSTM: deep asymmetric convolutional long short-term memory neural models for protein secondary structure prediction

(2019) Yanbu Guo et al.   BMC BIOINFORMATICS

Coral species identification with texture or structure images using a two-level classifier based on Convolutional Neural Networks

(2019) Anabel Gómez-Ríos et al.   KNOWLEDGE-BASED SYSTEMS

Recurrent neural network with attention mechanism for language model

(2019) Mu-Yen Chen et al.   NEURAL COMPUTING & APPLICATIONS

DeepANF: A deep attentive neural framework with distributed representation for chromatin accessibility prediction

(2019) Yanbu Guo et al.   NEUROCOMPUTING

Bio-Inspired Representation Learning for Visual Attention Prediction

(2019) Yuan Yuan et al.   IEEE Transactions on Cybernetics

Modeling polypharmacy side effects with graph convolutional networks

(2018) Marinka Zitnik et al.   BIOINFORMATICS

LeNup: learning nucleosome positioning from DNA sequences with improved convolutional neural networks

(2018) Juhua Zhang et al.   BIOINFORMATICS

Learned protein embeddings for machine learning

(2018) Kevin K Yang et al.   BIOINFORMATICS

Real-time prediction of online shoppers’ purchasing intention using multilayer perceptron and LSTM recurrent neural networks

(2018) C. Okan Sakar et al.   NEURAL COMPUTING & APPLICATIONS

Learning distributed representations of RNA sequences and its application for predicting RNA-protein binding sites with a convolutional neural network

(2018) Xiaoyong Pan et al.   NEUROCOMPUTING

Functional classification of long non-coding RNAs by k-mer content

(2018) Jessime M. Kirk et al.   NATURE GENETICS

Protein secondary structure prediction improved by recurrent neural networks integrated with 2-dimensional convolutional neural networks

(2018) Yanbu Guo et al.   Journal of Bioinformatics and Computational Biology

Gating mechanism based Natural Language Generation for spoken dialogue systems

(2018) Van-Khanh Tran et al.   NEUROCOMPUTING

Understanding Subtitles by Character-Level Sequence-to-Sequence Learning

(2017) Haijun Zhang et al.   IEEE Transactions on Industrial Informatics

Small bowel motility assessment based on fully convolutional networks and long short-term memory

(2017) Mengqi Pei et al.   KNOWLEDGE-BASED SYSTEMS

Automated detection of coronary artery disease using different durations of ECG segments with convolutional neural network

(2017) U. Rajendra Acharya et al.   KNOWLEDGE-BASED SYSTEMS

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

(2016) David R. Kelley et al.   GENOME RESEARCH

Deep learning

(2015) Yann LeCun et al.   NATURE

Predicting effects of noncoding variants with deep learning–based sequence model

(2015) Jian Zhou et al.   NATURE METHODS

Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features

(2014) Mahmoud Ghandi et al.   PLoS Computational Biology

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH

(2013) Jeff Vierstra et al.   NATURE METHODS

Discriminative prediction of mammalian enhancers from DNA sequence

(2011) D. Lee et al.   GENOME RESEARCH

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns

(2011) Sam John et al.   NATURE GENETICS

Progress and Promise of Genome-Wide Association Studies for Human Complex Trait Genetics

(2010) B. E. Stranger et al.   GENETICS

Genomewide Association Studies and Assessment of the Risk of Disease

(2010) Teri A. Manolio   NEW ENGLAND JOURNAL OF MEDICINE