Genome-wide selection and genetic improvement during modern maize breeding

Technological advances in maize breeding: past, present and future

(2019) Carson Andorf et al.   THEORETICAL AND APPLIED GENETICS

Characterization of Maize Phytochrome-Interacting Factors in Light Signaling and Photomorphogenesis

(2019) Guangxia Wu et al.   PLANT PHYSIOLOGY

PANNZER2: a rapid functional annotation web server

(2018) Petri Törönen et al.   NUCLEIC ACIDS RESEARCH

Patterns of genomic variation in Chinese maize inbred lines and implications for genetic improvement

(2018) Renyu Zhang et al.   THEORETICAL AND APPLIED GENETICS

Selection Signatures Underlying Dramatic Male Inflorescence Transformation During Modern Hybrid Maize Breeding

(2018) Joseph L. Gage et al.   GENETICS

Structure and Origin of theWhite CapLocus and Its Role in Evolution of Grain Color in Maize

(2017) Bao-Cai Tan et al.   GENETICS

UNBRANCHED3 regulates branching by modulating cytokinin biosynthesis and signaling in maize and rice

(2017) Yanfang Du et al.   NEW PHYTOLOGIST

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America

(2017) Kelly Swarts et al.   SCIENCE

Phytochrome-interacting factors directly suppress MIR156 expression to enhance shade-avoidance syndrome in Arabidopsis

(2017) Yurong Xie et al.   Nature Communications

Structure and Origin of theWhite CapLocus and Its Role in Evolution of Grain Color in Maize

(2017) Bao-Cai Tan et al.   GENETICS

Construction of the third-generation Zea mays haplotype map

(2017) Robert Bukowski et al.   GigaScience

An alternative strategy for targeted gene replacement in plants using a dual-sgRNA/Cas9 design

(2016) Yongping Zhao et al.   Scientific Reports

Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

(2015) Chunhui Li et al.   BMC BIOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

(2015) Wolfgang Stephan   MOLECULAR ECOLOGY

Genomic, Transcriptomic, and Phenomic Variation Reveals the Complex Adaptation of Modern Maize Breeding

(2015) Haijun Liu et al.   Molecular Plant

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

(2014) Z. A. Szpiech et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Survey of Plant Density Tolerance in U.S. Maize Germplasm

(2013) Brian D. Mansfield et al.   CROP SCIENCE

The Scientific Grand Challenges of the 21st Century for the Crop Science Society of America

(2012) Joseph G. Lauer et al.   CROP SCIENCE

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Genome-wide genetic changes during modern breeding of maize

(2012) Yinping Jiao et al.   NATURE GENETICS

Maize HapMap2 identifies extant variation from a genome in flux

(2012) Jer-Ming Chia et al.   NATURE GENETICS

Overexpression of AtLOV1 in Switchgrass Alters Plant Architecture, Lignin Content, and Flowering Time

(2012) Bin Xu et al.   PLoS One

Historical genomics of North American maize

(2012) J. van Heerwaarden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selection and Adaptation to High Plant Density in the Iowa Stiff Stalk Synthetic Maize ( L.) Population

(2011) Brent Brekke et al.   CROP SCIENCE

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries

(2010) G. Chuck et al.   DEVELOPMENT

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways

(2009) R. Rawat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

Circadian Clock Proteins LHY and CCA1 Regulate SVP Protein Accumulation to Control Flowering in Arabidopsis

(2008) S. Fujiwara et al.   PLANT CELL