A de novo chromosome‐level genome assembly of Coregonus sp. “ Balchen ”: One representative of the Swiss Alpine whitefish radiation
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Title
A de novo chromosome‐level genome assembly of
Coregonus
sp. “
Balchen
”: One representative of the Swiss Alpine whitefish radiation
Authors
Keywords
-
Journal
Molecular Ecology Resources
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-05-12
DOI
10.1111/1755-0998.13187
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- (2014) G. G. Faust et al. BIOINFORMATICS
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