Multiple Genetic Trajectories to Extreme Abiotic Stress Adaptation in Arctic Brassicaceae

The genetics of convergent evolution: insights from plant photosynthesis

(2019) Karolina Heyduk et al.   NATURE REVIEWS GENETICS

Convergent regulatory evolution and loss of flight in paleognathous birds

(2019) Timothy B. Sackton et al.   SCIENCE

Convergent evolution in the genomics era: new insights and directions

(2019) Timothy B. Sackton et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

(Non)Parallel Evolution

(2018) Daniel I. Bolnick et al.   Annual Review of Ecology Evolution and Systematics

Limited Evidence for Parallel Molecular Adaptations Associated with the Subterranean Niche in Mammals: A Comparative Study of Three Superorders

(2018) Kalina T J Davies et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative genomics reveals convergent evolution between the bamboo-eating giant and red pandas

(2017) Yibo Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Resources from Transcriptomes in the Brassicaceae Family

(2017) Lua Lopez et al.   Frontiers in Plant Science

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

extRemes2.0: An Extreme Value Analysis Package inR

(2016) Eric Gilleland et al.   Journal of Statistical Software

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Mammal madness: is the mammal tree of life not yet resolved?

(2016) Nicole M. Foley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular dynamics simulations and CD spectroscopy reveal hydration-induced unfolding of the intrinsically disordered LEA proteins COR15A and COR15B from Arabidopsis thaliana

(2016) Carlos Navarro-Retamal et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Predictable convergence in hemoglobin function has unpredictable molecular underpinnings

(2016) Chandrasekhar Natarajan et al.   SCIENCE

The Role of MAPK Modules and ABA during Abiotic Stress Signaling

(2016) Axel de Zelicourt et al.   TRENDS IN PLANT SCIENCE

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Plant glutathione peroxidases: Emerging role of the antioxidant enzymes in plant development and stress responses

(2015) Krisztina Bela et al.   JOURNAL OF PLANT PHYSIOLOGY

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

(2015) Chien-Hsun Huang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals

(2015) G. W. C. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Convergent evolution of the genomes of marine mammals

(2015) Andrew D Foote et al.   NATURE GENETICS

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

(2015) Itamar Sela et al.   NUCLEIC ACIDS RESEARCH

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Dissecting the cryoprotection mechanisms for dehydrins

(2014) Cesar L. Cuevas-Velazquez et al.   Frontiers in Plant Science

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

(2013) Ya Yang et al.   BMC GENOMICS

Key questions in the genetics and genomics of eco-evolutionary dynamics

(2013) A P Hendry   HEREDITY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Arabidopsis COLD SHOCK DOMAIN PROTEIN 2 is a negative regulator of cold acclimation

(2013) Kentaro Sasaki et al.   NEW PHYTOLOGIST

Low-temperature perception leading to gene expression and cold tolerance in higher plants

(2012) Marc R. Knight et al.   NEW PHYTOLOGIST

A gain-of-function mutation in IAA16 confers reduced responses to auxin and abscisic acid and impedes plant growth and fertility

(2012) Mauro A. Rinaldi et al.   PLANT MOLECULAR BIOLOGY

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

CONVERGENCE, ADAPTATION, AND CONSTRAINT

(2011) Jonathan B. Losos   EVOLUTION

The Effects of Alignment Error and Alignment Filtering on the Sitewise Detection of Positive Selection

(2011) G. Jordan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving the Performance of Positive Selection Inference by Filtering Unreliable Alignment Regions

(2011) Eyal Privman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny and systematics of the genus Draba (Brassicaceae) and identification of its most closely related genera

(2010) Ingrid Jordon-Thaden et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

Cell physiology of plants growing in cold environments

(2010) Cornelius Lütz   PROTOPLASMA

Biogeography and Phylogeny of Cardamine (Brassicaceae)1

(2009) Tor Carlsen et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Far-red light inhibits germination through DELLA-dependent stimulation of ABA synthesis and ABI3 activity

(2009) Urszula Piskurewicz et al.   EMBO JOURNAL

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The High Light Response in Arabidopsis Involves ABA Signaling between Vascular and Bundle Sheath Cells

(2009) G. Galvez-Valdivieso et al.   PLANT CELL

Evidence for an ancient adaptive episode of convergent molecular evolution

(2009) T. A. Castoe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana

(2008) Michaela Hundertmark et al.   BMC GENOMICS

Duplication and adaptive evolution of the COR15 genes within the highly cold-tolerant Draba lineage (Brassicaceae)

(2008) Dangwei Zhou et al.   GENE

Comprehensive Functional Analysis of the Catalase Gene Family inArabidopsis thaliana

(2008) Yan-Yan Du et al.   Journal of Integrative Plant Biology

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant responses to photoperiod

(2008) Stephen D. Jackson   NEW PHYTOLOGIST

A role forSENSITIVE TO FREEZING2in protecting chloroplasts against freeze-induced damage in Arabidopsis

(2008) Nicolas Fourrier et al.   PLANT JOURNAL