Low Spontaneous Mutation Rate and Pleistocene Radiation of Pea Aphids

Low genetic variation is associated with low mutation rate in the giant duckweed

(2019) Shuqing Xu et al.   Nature Communications

Evaluating genomic signatures of “the large X-effect” during complex speciation

(2018) Daven C. Presgraves   MOLECULAR ECOLOGY

Identifying Genomic Hotspots Of Differentiation And Candidate Genes Involved In The Adaptive Divergence Of Pea Aphid Host Races

(2018) Pierre Nouhaud et al.   MOLECULAR ECOLOGY

Intrinsic pre-zygotic reproductive isolation of distantly related pea aphid host races

(2018) Varvara Fazalova et al.   Biology Letters

Comparative Gene Mapping as a Tool to Understand the Evolution of Pest Crop Insect Chromosomes

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(2016) Philip Ewels et al.   BIOINFORMATICS

Direct Determination of the Mutation Rate in the Bumblebee Reveals Evidence for Weak Recombination-Associated Mutation and an Approximate Rate Constancy in Insects

(2016) Haoxuan Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spontaneous Mutation Accumulation inDaphnia pulexin Selection-Free vs. Competitive Environments

(2016) Jullien M. Flynn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

(2016) Richard G. Harrison et al.   MOLECULAR ECOLOGY

The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

(2016) Nicolas Bierne et al.   Current Zoology

Genetic characterisation of new host-specialised biotypes and novel associations with bacterial symbionts in the pea aphid complex

(2015) Jean Peccoud et al.   Insect Conservation and Diversity

Parent–progeny sequencing indicates higher mutation rates in heterozygotes

(2015) Sihai Yang et al.   NATURE

Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies

(2015) Krzysztof M. Kozak et al.   SYSTEMATIC BIOLOGY

The cytogenetic architecture of the aphid genome

(2014) Gian Carlo Manicardi et al.   BIOLOGICAL REVIEWS

Estimation of the Spontaneous Mutation Rate in Heliconius melpomene

(2014) Peter D. Keightley et al.   MOLECULAR BIOLOGY AND EVOLUTION

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geographic Mode of Speciation and Genomic Divergence

(2013) Jeffrey L. Feder et al.   Annual Review of Ecology Evolution and Systematics

Estimation of the Spontaneous Mutation Rate per Nucleotide Site in a Drosophila melanogaster Full-Sib Family

(2013) Peter D. Keightley et al.   GENETICS

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

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Variation in Base-Substitution Mutation in Experimental and Natural Lineages of Caenorhabditis Nematodes

(2012) Dee R. Denver et al.   Genome Biology and Evolution

Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex

(2012) J. Jaquiéry et al.   MOLECULAR ECOLOGY

LocalizingFSToutliers on a QTL map reveals evidence for large genomic regions of reduced gene exchange during speciation-with-gene-flow

(2012) Sara Via et al.   MOLECULAR ECOLOGY

POPULATION GENETIC STRUCTURE AND SECONDARY SYMBIONTS IN HOST-ASSOCIATED POPULATIONS OF THE PEA APHID COMPLEX

(2011) Julia Ferrari et al.   EVOLUTION

The pea aphid complex as a model of ecological speciation

(2010) PECCOUD JEAN et al.   ECOLOGICAL ENTOMOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Why do species vary in their rate of molecular evolution?

(2009) L. Bromham   Biology Letters

A continuum of genetic divergence from sympatric host races to species in the pea aphid complex

(2009) J. Peccoud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Post-Pleistocene radiation of the pea aphid complex revealed by rapidly evolving endosymbionts

(2009) J. Peccoud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Refugia revisited: individualistic responses of species in space and time

(2009) J. R. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria

(2009) N. A. Moran et al.   SCIENCE

The genetic mosaic suggests a new role for hitchhiking in ecological speciation

(2008) SARA VIA et al.   MOLECULAR ECOLOGY