Sparse Scanning Electron Microscopy Data Acquisition and Deep Neural Networks for Automated Segmentation in Connectomics

Tomographic Collection of Block-Based Sparse STEM Images: Practical Implementation and Impact on the Quality of the 3D Reconstructed Volume

(2019) Sylvain Trépout   Materials

Deep Learning for Sparse Scanning Electron Microscopy

(2019) Patrick Trampert et al.   MICROSCOPY AND MICROANALYSIS

Sparse Scanning Electron Microscopy and Deep Learning for Imaging and Segmentation of Neuron Structures

(2019) Tim Dahmen et al.   MICROSCOPY AND MICROANALYSIS

DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs

(2018) Liang-Chieh Chen et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

How should a fixed budget of dwell time be spent in scanning electron microscopy to optimize image quality?

(2018) Patrick Trampert et al.   ULTRAMICROSCOPY

A Systematic Review of Compressive Sensing: Concepts, Implementations and Applications

(2018) Meenu Rani et al.   IEEE Access

Exemplar-Based Inpainting Based on Dictionary Learning for Sparse Scanning Electron Microscopy

(2018) Patrick Trampert et al.   MICROSCOPY AND MICROANALYSIS

Beyond a Gaussian Denoiser: Residual Learning of Deep CNN for Image Denoising

(2017) Kai Zhang et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

High-Throughput Large Volume SEM Workflow using Sparse Scanning and In-painting Algorithms Inspired by Compressive Sensing

(2017) Faysal Boughorbel et al.   MICROSCOPY AND MICROANALYSIS

Acquisition of STEM Images by Adaptive Compressive Sensing

(2017) Weiyi Xie et al.   MICROSCOPY AND MICROANALYSIS

Whole-brain serial-section electron microscopy in larval zebrafish

(2017) David Grant Colburn Hildebrand et al.   NATURE

From Cajal to Connectome and Beyond

(2016) Larry W. Swanson et al.   Annual Review of Neuroscience

Feature Adaptive Sampling for Scanning Electron Microscopy

(2016) Tim Dahmen et al.   Scientific Reports

Creating High-Resolution Multiscale Maps of Human Tissue Using Multi-beam SEM

(2016) André F. Pereira et al.   PLoS Computational Biology

Architecture of the cerebral cortical association connectome underlying cognition

(2015) Mihail Bota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crowdsourcing the creation of image segmentation algorithms for connectomics

(2015) Ignacio Arganda-Carreras et al.   Frontiers in Neuroanatomy

The big data challenges of connectomics

(2014) Jeff W Lichtman et al.   NATURE NEUROSCIENCE

Analysis Operator Learning and its Application to Image Reconstruction

(2013) S. Hawe et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

A dynamic scanning method based on signal-statistics for scanning electron microscopy

(2013) F. Timischl   SCANNING

Making data sharing work: The FCP/INDI experience

(2012) Maarten Mennes et al.   NEUROIMAGE

Nonparametric Bayesian Dictionary Learning for Analysis of Noisy and Incomplete Images

(2011) Mingyuan Zhou et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING