Imaging flowers: a guide to current microscopy and tomography techniques to study flower development

Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy

(2020) Sona Valuchova et al.   eLife

FPbase: a community-editable fluorescent protein database

(2019) Talley J. Lambert   NATURE METHODS

A Growth-Based Framework for Leaf Shape Development and Diversity

(2019) Daniel Kierzkowski et al.   CELL

Characterizing 3D inflorescence architecture in grapevine using X-ray imaging and advanced morphometrics: implications for understanding cluster density

(2019) Mao Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Using 3D X-ray Microscopy to Study Crown Root Development and Primary Root Tip Growth in Diverse Maize (Zea mays L.) Lines

(2019) Keith E. Duncan et al.   MICROSCOPY AND MICROANALYSIS

The microscope makers putting ever-larger biological samples under the spotlight

(2019) Jeffrey M. Perkel   NATURE

Stabilizing gold nanoparticles for use in X-ray computed tomography imaging of soil systems

(2019) Callum P. Scotson et al.   Royal Society Open Science

SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis

(2018) Yifeng Xu et al.   EMBO JOURNAL

Gynoecium and Fruit Development in Heliotropium Sect. Heliothamnus (Heliotropiaceae)

(2018) Julius Jeiter et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The Quantitative Genetic Control of Root Architecture in Maize

(2018) Adam L Bray et al.   PLANT AND CELL PHYSIOLOGY

Expansion microscopy: principles and uses in biological research

(2018) Asmamaw T. Wassie et al.   NATURE METHODS

Investigating the microstructure of plant leaves in 3D with lab-based X-ray computed tomography

(2018) Andrew W. Mathers et al.   Plant Methods

Cytokinin – A Developing Story

(2018) Brecht Wybouw et al.   TRENDS IN PLANT SCIENCE

What Has Been Seen Cannot Be Unseen—Detecting Auxin In Vivo

(2017) Barbora Pařízková et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Novel computed tomography-based tools reliably quantify plant reproductive investment

(2017) Y M Staedler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microscopy: hello, adaptive optics

(2017) Vivien Marx   NATURE METHODS

Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta

(2017) Marie Monniaux et al.   NEW PHYTOLOGIST

Non-destructive determination of floral staging in cereals using X-ray micro computed tomography (µCT)

(2017) Saoirse R. Tracy et al.   Plant Methods

Advances in Imaging Plant Cell Dynamics

(2017) George Komis et al.   PLANT PHYSIOLOGY

SUPERMANprevents class B gene expression and promotes stem cell termination in the fourth whorl ofArabidopsis thalianaflowers

(2017) Nathanaël Prunet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation

(2017) Nobutoshi Yamaguchi et al.   Nature Communications

Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal

(2017) Heather M Meyer et al.   eLife

A Mechanical Feedback Restricts Sepal Growth and Shape in Arabidopsis

(2016) Nathan Hervieux et al.   CURRENT BIOLOGY

Live confocal imaging of Arabidopsis flower buds

(2016) Nathanaël Prunet et al.   DEVELOPMENTAL BIOLOGY

Cytoskeleton dynamics control the first asymmetric cell division inArabidopsiszygote

(2016) Yusuke Kimata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ClearSee: a rapid optical clearing reagent for whole-plant fluorescence imaging

(2015) D. Kurihara et al.   DEVELOPMENT

Reporters for sensitive and quantitative measurement of auxin response

(2015) Che-Yang Liao et al.   NATURE METHODS

Superresolution live imaging of plant cells using structured illumination microscopy

(2015) George Komis et al.   Nature Protocols

Preparation of plants for developmental and cellular imaging by light-sheet microscopy

(2015) Miroslav Ovečka et al.   Nature Protocols

Two-photon imaging with longer wavelength excitation in intact Arabidopsis tissues

(2015) Yoko Mizuta et al.   PROTOPLASMA

Super-resolution Microscopy in Plant Cell Imaging

(2015) George Komis et al.   TRENDS IN PLANT SCIENCE

MorphoGraphX: A platform for quantifying morphogenesis in 4D

(2015) Pierre Barbier de Reuille et al.   eLife

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors

(2014) D. Roeland Boer et al.   CELL

Physical Forces Regulate Plant Development and Morphogenesis

(2014) Arun Sampathkumar et al.   CURRENT BIOLOGY

Matching Patterns of Gene Expression to Mechanical Stiffness at Cell Resolution through Quantitative Tandem Epifluorescence and Nanoindentation

(2014) P. Milani et al.   PLANT PHYSIOLOGY

Dynamics and Organization of Cortical Microtubules as Revealed by Superresolution Structured Illumination Microscopy

(2014) G. Komis et al.   PLANT PHYSIOLOGY

Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells

(2014) B. Sun et al.   SCIENCE

Live imaging of calcium spikes during double fertilization in Arabidopsis

(2014) Yuki Hamamura et al.   Nature Communications

Abscisic acid dynamics in roots detected with genetically encoded FRET sensors

(2014) Alexander M Jones et al.   eLife

FRET-based reporters for the direct visualization of abscisic acid concentration changes and distribution in Arabidopsis

(2014) Rainer Waadt et al.   eLife

Subcellular and supracellular mechanical stress prescribes cytoskeleton behavior in Arabidopsis cotyledon pavement cells

(2014) Arun Sampathkumar et al.   eLife

Cytokinin signalling inhibitory fields provide robustness to phyllotaxis

(2013) Fabrice Besnard et al.   NATURE

Patterning and Lifetime of Plasma Membrane-Localized Cellulose Synthase Is Dependent on Actin Organization in Arabidopsis Interphase Cells

(2013) A. Sampathkumar et al.   PLANT PHYSIOLOGY

A Robust and Sensitive Synthetic Sensor to Monitor the Transcriptional Output of the Cytokinin Signaling Network in Planta

(2013) E. Zurcher et al.   PLANT PHYSIOLOGY

Plant Tissues in 3D via X-Ray Tomography: Simple Contrasting Methods Allow High Resolution Imaging

(2013) Yannick M. Staedler et al.   PLoS One

Transgenics in groundnut (Arachis hypogaea L.) expressing cry1AcF gene for resistance to Spodoptera litura (F.)

(2013) G. Keshavareddy et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Quantitative Imaging with Fluorescent Biosensors

(2012) Sakiko Okumoto et al.   Annual Review of Plant Biology

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

(2012) Géraldine Brunoud et al.   NATURE

Light sheet microscopy for real-time developmental biology

(2011) Michael Weber et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Recycling, clustering, and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane

(2011) J. Kleine-Vehn et al.   Molecular Systems Biology

DORNRÖSCHEN-LIKE expression marks Arabidopsis floral organ founder cells and precedes auxin response maxima

(2011) John William Chandler et al.   PLANT MOLECULAR BIOLOGY

The pollen tube journey in the pistil and imaging the in vivo process by two-photon microscopy

(2010) Alice Y. Cheung et al.   JOURNAL OF EXPERIMENTAL BOTANY

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution

(2010) Romain Fernandez et al.   NATURE METHODS

Three-dimensional geometric morphometrics for studying floral shape variation

(2010) Timotheüs van der Niet et al.   TRENDS IN PLANT SCIENCE

In planta localisation patterns of MADS domain proteins during floral development in Arabidopsis thaliana

(2009) Susan L Urbanus et al.   BMC PLANT BIOLOGY

Distinct and Dynamic Auxin Activities During Reproductive Development

(2009) E. Sundberg et al.   Cold Spring Harbor Perspectives in Biology

Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis

(2008) Bruno Müller et al.   NATURE

Signals Derived from YABBY Gene Activities in Organ Primordia Regulate Growth and Partitioning of Arabidopsis Shoot Apical Meristems

(2008) A. Goldshmidt et al.   PLANT CELL