Large‐scale DNA‐based survey of frogs in Amazonia suggests a vast underestimation of species richness and endemism

Regional influences on community structure across the tropical-temperate divide

(2019) Alexander E. White et al.   Nature Communications

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

(2019) Guilhem Sommeria‐Klein et al.   Molecular Ecology Resources

How many species of mammals are there?

(2018) Connor J Burgin et al.   JOURNAL OF MAMMALOGY

Biogeographic regions and events of isolation and diversification of the endemic biota of the tropical Andes

(2018) Nicolas A. Hazzi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the brink of extinction: two new species of Anomaloglossus from French Guiana and amended definitions of Anomaloglossus degranvillei and A. surinamensis (Anura: Aromobatidae)

(2018) FOUQUET ANTOINE et al.   ZOOTAXA

When the unknown lives next door: a study of central Amazonian anurofauna

(2018) JESSICA MOTTA et al.   ZOOTAXA

The influence of riverine barriers, climate, and topography on the biogeographic regionalization of Amazonian anurans

(2018) Marcela Brasil de Castro Godinho et al.   Scientific Reports

A Pan-Amazonian species delimitation: high species diversity within the genus Amazophrynella (Anura: Bufonidae)

(2018) Rommel R. Rojas et al.   PeerJ

Extending the Latent Dirichlet Allocation model to presence/absence data: A case study on North American breeding birds and biogeographical shifts expected from climate change

(2018) Denis Valle et al.   GLOBAL CHANGE BIOLOGY

Pervasive Rise of Small-scale Deforestation in Amazonia

(2018) Michelle Kalamandeen et al.   Scientific Reports

The role of Pleistocene climate change in the genetic variability, distribution and demography of Proechimys cuvieri and P. guyannensis (Rodentia: Echimyidae) in northeastern Amazonia

(2018) Claudia Regina Silva et al.   PLoS One

Patterns, biases and prospects in the distribution and diversity of Neotropical snakes

(2017) Thaís B. Guedes et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Macroecological conclusions based on IUCN expert maps: A call for caution

(2017) K. Matthias B. Herkt et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Cryptic diversity in Amazonian frogs: Integrative taxonomy of the genus Anomaloglossus (Amphibia: Anura: Aromobatidae) reveals a unique case of diversification within the Guiana Shield

(2017) Jean-Pierre Vacher et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeography of Amazon birds: rivers limit species composition, but not areas of endemism

(2017) Ubirajara Oliveira et al.   Scientific Reports

Biogeography: Drivers of bioregionalization

(2017) Alexandre Antonelli   Nature Ecology & Evolution

Coalescent-based delimitation outperforms distance-based methods for delineating less divergent species: the case of Kurixalus odontotarsus species group

(2017) Guohua Yu et al.   Scientific Reports

Toward quantification of the impact of 21st-century deforestation on the extinction risk of terrestrial vertebrates

(2016) Łukasz Tracewski et al.   CONSERVATION BIOLOGY

Algorithmic single-locus species delimitation: effects of sampling effort, variation and nonmonophyly in four methods and 1870 species of beetles

(2016) Mikko Pentinsaari et al.   Molecular Ecology Resources

High Species Richness of Scinax Treefrogs (Hylidae) in a Threatened Amazonian Landscape Revealed by an Integrative Approach

(2016) Miquéias Ferrão et al.   PLoS One

The extent of 2014 forest fragmentation in the Brazilian Amazon

(2016) Laura Barbosa Vedovato et al.   Regional Environmental Change

Cryptic diversity in the Hypsiboas semilineatus species group (Amphibia, Anura) with the description of a new species from the eastern Guiana Shield

(2016) ANTOINE FOUQUET et al.   ZOOTAXA

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Long-term decline of the Amazon carbon sink

(2015) R. J. W. Brienen et al.   NATURE

A new Dendropsophus Fitzinger, 1843 (Anura: Hylidae) of the parviceps group from the lowlands of the Guiana Shield

(2015) Antoine FOUQUET et al.   ZOOTAXA

A network approach for identifying and delimiting biogeographical regions

(2015) Daril A. Vilhena et al.   Nature Communications

Exploring Genetic Divergence in a Species-Rich Insect Genus Using 2790 DNA Barcodes

(2015) Xiaolong Lin et al.   PLoS One

Insights from Integrative Systematics Reveal Cryptic Diversity in Pristimantis Frogs (Anura: Craugastoridae) from the Upper Amazon Basin

(2015) H. Mauricio Ortega-Andrade et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Habitat availability for amphibians and extinction threat: a global analysis

(2014) Gentile Francesco Ficetola et al.   DIVERSITY AND DISTRIBUTIONS

Decomposing biodiversity data using the Latent Dirichlet Allocation model, a probabilistic multivariate statistical method

(2014) Denis Valle et al.   ECOLOGY LETTERS

Biogeographic Distribution Patterns and Their Correlates in the Diverse Frog Fauna of the Atlantic Forest Hotspot

(2014) Tiago S. Vasconcelos et al.   PLoS One

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identifying the World's Most Climate Change Vulnerable Species: A Systematic Trait-Based Assessment of all Birds, Amphibians and Corals

(2013) Wendy B. Foden et al.   PLoS One

Vertebrate Dissimilarity Due to Turnover and Richness Differences in a Highly Beta-Diverse Region: The Role of Spatial Grain Size, Dispersal Ability and Distance

(2013) Jaime M. Calderón-Patrón et al.   PLoS One

Global patterns of terrestrial vertebrate diversity and conservation

(2013) C. N. Jenkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematics of spiny-backed treefrogs (Hylidae:Osteocephalus): an Amazonian puzzle

(2013) Karl-Heinz Jungfer et al.   ZOOLOGICA SCRIPTA

A new species of the genus Pristimantis (Amphibia, Craugastoridae) associated with the moderately evelated massifs of French Guiana

(2013) Antoine Fouquet et al.   ZOOTAXA

The Role of Physical Barriers in the Location of Avian Suture Zones in the Guiana Shield, Northern Amazonia

(2012) Luciano Nicolas Naka et al.   AMERICAN NATURALIST

A critical review on the utility of DNA barcoding in biodiversity conservation

(2012) P. Krishna Krishnamurthy et al.   BIODIVERSITY AND CONSERVATION

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

(2012) Noah M Reid et al.   BMC EVOLUTIONARY BIOLOGY

Humidity levels drive reproductive modes and phylogenetic diversity of amphibians in the Brazilian Atlantic Forest

(2012) Fernando Rodrigues Silva et al.   JOURNAL OF BIOGEOGRAPHY

The Amazon basin in transition

(2012) Eric A. Davidson et al.   NATURE

Persistent effects of a severe drought on Amazonian forest canopy

(2012) S. Saatchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Update of Wallace's Zoogeographic Regions of the World

(2012) B. G. Holt et al.   SCIENCE

Multiple Quaternary Refugia in the Eastern Guiana Shield Revealed by Comparative Phylogeography of 12 Frog Species

(2012) Antoine Fouquet et al.   SYSTEMATIC BIOLOGY

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Primary forests are irreplaceable for sustaining tropical biodiversity

(2011) Luke Gibson et al.   NATURE

Global land use change, economic globalization, and the looming land scarcity

(2011) Eric F. Lambin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High levels of cryptic species diversity uncovered in Amazonian frogs

(2011) W. C. Funk et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Accounting for uncertainty when mapping species distributions: The need for maps of ignorance

(2011) Duccio Rocchini et al.   PROGRESS IN PHYSICAL GEOGRAPHY

Integrative inventory of Bolivia’s lowland anurans reveals hidden diversity

(2011) Martin Jansen et al.   ZOOLOGICA SCRIPTA

Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description

(2010) Paul Z. Goldstein et al.   BIOESSAYS

Towards a biogeographic regionalization of the European biota

(2010) Marta Rueda et al.   JOURNAL OF BIOGEOGRAPHY

A framework for delineating biogeographical regions based on species distributions

(2010) Holger Kreft et al.   JOURNAL OF BIOGEOGRAPHY

Extreme levels of hidden diversity in microscopic animals (Rotifera) revealed by DNA taxonomy

(2009) Diego Fontaneto et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory

(2009) D. R. Vieites et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global comparisons of beta diversity among mammals, birds, reptiles, and amphibians across spatial scales and taxonomic ranks

(2009) Hong QIAN   Journal of Systematics and Evolution

Amphibian phylogeography: a model for understanding historical aspects of species distributions

(2008) I Zeisset et al.   HEREDITY

Impact of a drier Early-Mid-Holocene climate upon Amazonian forests

(2008) F. E Mayle et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Climate Change, Deforestation, and the Fate of the Amazon

(2007) Y. Malhi et al.   SCIENCE