Time-Course Transcriptome Study Reveals Mode of bZIP Transcription Factors on Light Exposure in Arabidopsis

FvbHLH9, functions as a positive regulator of anthocyanin biosynthesis, by forming HY5-bHLH9 transcription complex in strawberry fruits

(2020) Yang Li et al.   PLANT AND CELL PHYSIOLOGY

Functional Interrelation of MYC 2 and HY 5 Plays an Important Role in Arabidopsis Seedling Development

(2019) Moumita Chakraborty et al.   PLANT JOURNAL

HY5 Interacts with the Histone Deacetylase HDA15 to Repress Hypocotyl Cell Elongation in Photomorphogenesis

(2019) Linmao Zhao et al.   PLANT PHYSIOLOGY

Plant photoreceptors: Multi-functional sensory proteins and their signaling networks

(2019) Inyup Paik et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Translational Landscape of Protein-Coding and Non-Protein-Coding RNAs upon Light Exposure in Arabidopsis

(2019) Yukio Kurihara et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis bZIP transcription factor family — an update

(2018) Wolfgang Dröge-Laser et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression inArabidopsis

(2018) Yukio Kurihara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide regulation of light-controlled seedling morphogenesis by three families of transcription factors

(2018) Hui Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping genome-wide transcription-factor binding sites using DAP-seq

(2017) Anna Bartlett et al.   Nature Protocols

GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana

(2017) Venkategowda Ramegowda et al.   Scientific Reports

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

The Multifaceted Roles of HY5 in Plant Growth and Development

(2016) Sreeramaiah N. Gangappa et al.   Molecular Plant

Mapping transcription factor interactome networks using HaloTag protein arrays

(2016) Junshi Yazaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A transcription factor hierarchy defines an environmental stress response network

(2016) L. Song et al.   SCIENCE

Interaction of MYC2 and GBF1 results in functional antagonism in blue light-mediated Arabidopsis seedling development

(2015) Jay P. Maurya et al.   PLANT JOURNAL

Gene Expression Regulation in Photomorphogenesis from the Perspective of the Central Dogma

(2014) Shu-Hsing Wu   Annual Review of Plant Biology

Next-Generation Sequencing of Genomic DNA Fragments Bound to a Transcription Factor in Vitro Reveals Its Regulatory Potential

(2014) Yukio Kurihara et al.   Genes

Genome-Wide DNA Binding of GBF1 Is Modulated by Its Heterodimerizing Protein Partners, HY5 and HYH

(2013) Hathi Ram et al.   Molecular Plant

Molecular Interactions of GBF1 with HY5 and HYH Proteins during Light-mediated Seedling Development inArabidopsis thaliana

(2012) Aparna Singh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

GADEM: A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery

(2009) Leping Li   JOURNAL OF COMPUTATIONAL BIOLOGY

Hydrogen peroxide is involved in high blue light-induced chloroplast avoidance movements in Arabidopsis

(2008) Feng Wen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY