Genomic prediction applied to multiple traits and environments in second season maize hybrids

Accuracy of genomic evaluation with weighted single-step genomic best linear unbiased prediction for milk production traits, udder type traits, and somatic cell scores in French dairy goats

(2019) M. Teissier et al.   JOURNAL OF DAIRY SCIENCE

Improving accuracies of genomic predictions for drought tolerance in maize by joint modeling of additive and dominance effects in multi-environment trials

(2018) Kaio Olímpio Das Graças Dias et al.   HEREDITY

Accuracy of genomic selection to predict maize single-crosses obtained through different mating designs

(2018) Roberto Fristche-Neto et al.   THEORETICAL AND APPLIED GENETICS

Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality

(2018) Bettina Lado et al.   THEORETICAL AND APPLIED GENETICS

Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea

(2018) Manish Roorkiwal et al.   Scientific Reports

Multivariate GBLUP Improves Accuracy of Genomic Selection for Yield and Fruit Weight in Biparental Populations of Vaccinium macrocarpon Ait

(2018) Giovanny Covarrubias-Pazaran et al.   Frontiers in Plant Science

Review on resistance to wheat blast disease (Magnaporthe oryzae Triticum) from the breeder point-of-view: use of the experience on resistance to rice blast disease

(2017) M. Vales et al.   EUPHYTICA

Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model

(2017) R T Resende et al.   HEREDITY

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum

(2017) Samuel B. Fernandes et al.   THEORETICAL AND APPLIED GENETICS

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genetic dissection of powdery mildew resistance in interspecific half-sib grapevine families using SNP-based maps

(2016) Soon Li Teh et al.   MOLECULAR BREEDING

Statistical methods to explore genotype-by-environment interaction for loblolly pine clonal trials

(2016) Salvador Alejandro Gezan et al.   Tree Genetics & Genomes

Multivariate genomic model improves analysis of oil palm (Elaeis guineensis Jacq.) progeny tests

(2015) Alexandre Marchal et al.   MOLECULAR BREEDING

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Genome Properties and Prospects of Genomic Prediction of Hybrid Performance in a Breeding Program of Maize

(2014) Frank Technow et al.   GENETICS

Breeding drought-tolerant maize hybrids for the US corn-belt: discovery to product

(2014) Mark Cooper et al.   JOURNAL OF EXPERIMENTAL BOTANY

Single Step, a general approach for genomic selection

(2014) Andres Legarra et al.   Livestock Science

Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes

(2014) MeiYee Law et al.   PLANT PHYSIOLOGY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Single-step methods for genomic evaluation in pigs

(2012) O. F. Christensen et al.   Animal

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Genomewide Selection versus Marker-assisted Recurrent Selection to Improve Grain Yield and Stover-quality Traits for Cellulosic Ethanol in Maize

(2012) Jon M. Massman et al.   CROP SCIENCE

Multiple-Trait Genomic Selection Methods Increase Genetic Value Prediction Accuracy

(2012) Yi Jia et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Multiple-trait genomic evaluation of linear type traits using genomic and phenotypic data in US Holsteins

(2011) S. Tsuruta et al.   JOURNAL OF DAIRY SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score1

(2010) I. Aguilar et al.   JOURNAL OF DAIRY SCIENCE

Effect of enlarging the reference population with (un)genotyped animals on the accuracy of genomic selection in dairy cattle

(2010) M. Pszczola et al.   JOURNAL OF DAIRY SCIENCE

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

An ecologist’s guide to the animal model

(2009) Alastair J. Wilson et al.   JOURNAL OF ANIMAL ECOLOGY

Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information

(2009) I. Misztal et al.   JOURNAL OF DAIRY SCIENCE

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE