Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus)

Liver transcriptome analysis reveals extensive transcriptional plasticity during acclimation to low salinity in Cynoglossus semilaevis

(2018) Yufeng Si et al.   BMC GENOMICS

Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish

(2018) Thomas H. Hampton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Histological and transcriptomic responses of two immune organs, the spleen and head kidney, in Nile tilapia ( Oreochromis niloticus ) to long-term hypersaline stress

(2018) Chang Xu et al.   FISH & SHELLFISH IMMUNOLOGY

Molecular characterization of a CC motif chemokine 19-like gene in ayu ( Plecoglossus altivelis ) and its role in leukocyte trafficking

(2018) Feng Chen et al.   FISH & SHELLFISH IMMUNOLOGY

Identification of immune-related genes in gill cells of Japanese eels ( Anguilla japonica ) in adaptation to water salinity changes

(2018) Jie Gu et al.   FISH & SHELLFISH IMMUNOLOGY

Characterization of TLR5 and TLR9 from silver pomfret ( Pampus argenteus ) and expression profiling in response to bacterial components

(2018) Quanxin Gao et al.   FISH & SHELLFISH IMMUNOLOGY

The effects of acute transfer to freshwater on ion transporters of the pharyngeal cavity in European seabass (Dicentrarchus labrax)

(2018) Gersende Maugars et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

RNA sequencing, de novo assembly and differential analysis of the gill transcriptome of freshwater climbing perch Anabas testudineus after six days of seawater exposure

(2018) X. L. Chen et al.   JOURNAL OF FISH BIOLOGY

Muscle and liver transcriptome characterization and genetic marker discovery in the farmed meagre, Argyrosomus regius

(2018) T. Manousaki et al.   Marine Genomics

Using RNA-seq to determine patterns of sex-bias in gene expression in the brain of the sex-role reversed Gulf Pipefish ( Syngnathus scovelli )

(2018) Andria P. Beal et al.   Marine Genomics

Brain Transcriptome Profiling Analysis of Nile Tilapia (Oreochromis niloticus) Under Long-Term Hypersaline Stress

(2018) Yan Liu et al.   Frontiers in Physiology

Histopathological analysis and the immune related gene expression profiles of mandarin fish (Siniperca chuatsi) infected with Aeromonas hydrophila

(2018) Nan Chen et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptomic analysis reveal an efficient osmoregulatory system in Siberian sturgeon Acipenser baeri in response to salinity stress

(2018) Baoying Guo et al.   Scientific Reports

Transcriptomic analysis reveals dose-dependent modes of action of benzo(a)pyrene in polar cod (Boreogadus saida)

(2018) You Song et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Characterization of basic immune function parameters in the fathead minnow ( Pimephales promelas ), a common model in environmental toxicity testing

(2017) Leah M. Thornton et al.   FISH & SHELLFISH IMMUNOLOGY

Metabolite and gene expression responses in juvenile flounder Paralichthys olivaceus exposed to reduced salinities

(2017) Huifeng Wu et al.   FISH & SHELLFISH IMMUNOLOGY

The chemokinome superfamily in channel catfish: I. CXC subfamily and their involvement in disease defense and hypoxia responses

(2017) Qiang Fu et al.   FISH & SHELLFISH IMMUNOLOGY

Low salinity affects cellularity, DNA methylation, and mRNA expression of igf1 in the liver of half smooth tongue sole (Cynoglossus semilaevis)

(2017) Siping Li et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Cloning, characterization, and function of MyD88 in silvery pomfret ( Pampus argenteus ) in response to bacterial challenge

(2017) Quanxin Gao et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats

(2017) Taylor C. Gibbons et al.   MOLECULAR ECOLOGY

Proteomic and microRNA Transcriptome Analysis revealed the microRNA-SmyD1 network regulation in Skeletal Muscle Fibers performance of Chinese perch

(2017) WuYing Chu et al.   Scientific Reports

RNA-Seq analysis of salinity stress–responsive transcriptome in the liver of spotted sea bass (Lateolabrax maculatus)

(2017) Xiaoyan Zhang et al.   PLoS One

MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models

(2016) Katerina C. Nastou et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Decreasing salinity of seawater moderates immune response and increases survival rate of giant groupers post betanodavirus infection

(2016) Tz-Shiang Chen et al.   FISH & SHELLFISH IMMUNOLOGY

Ability of Lactobacillus plantarum lipoteichoic acid to inhibit Vibrio anguillarum-induced inflammation and apoptosis in silvery pomfret (Pampus argenteus) intestinal epithelial cells

(2016) Quanxin Gao et al.   FISH & SHELLFISH IMMUNOLOGY

Molecular characterization and expression analysis of toll-like receptor 2 in response to bacteria in silvery pomfret intestinal epithelial cells

(2016) Quanxin Gao et al.   FISH & SHELLFISH IMMUNOLOGY

Draft genome sequence of the silver pomfret fish, Pampus argenteus

(2016) Sabah AlMomin et al.   GENOME

Liver transcriptome sequencing and de novo annotation of the large yellow croaker ( Larimichthy crocea ) under heat and cold stress

(2016) Baoying Qian et al.   Marine Genomics

Inflammatory networks underlying colorectal cancer

(2016) Audrey Lasry et al.   NATURE IMMUNOLOGY

Engineering Metamorphic Chemokine Lymphotactin/XCL1 into the GAG-Binding, HIV-Inhibitory Dimer Conformation

(2015) Jamie C. Fox et al.   ACS Chemical Biology

Cloning HSP70 and HSP90 genes of kaluga (Huso dauricus) and the effects of temperature and salinity stress on their gene expression

(2015) Guogan Peng et al.   CELL STRESS & CHAPERONES

iTRAQ proteomic analysis of salinity acclimation proteins in the gill of tropical marbled eel (Anguilla marmorata)

(2015) Yihe Jia et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Physiological mechanisms used by fish to cope with salinity stress

(2015) D. Kultz   JOURNAL OF EXPERIMENTAL BIOLOGY

Optimizing de novo transcriptome assembly and extending genomic resources for striped catfish (Pangasianodon hypophthalmus)

(2015) Nguyen Minh Thanh et al.   Marine Genomics

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Dynamics and thermodynamic properties of CXCL7 chemokine

(2015) Charles A. Herring et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Chemokine System in Innate Immunity

(2015) Caroline L. Sokol et al.   Cold Spring Harbor Perspectives in Biology

Transcriptome Profiling and Molecular Pathway Analysis of Genes in Association with Salinity Adaptation in Nile Tilapia Oreochromis niloticus

(2015) Zhixin Xu et al.   PLoS One

Esophageal desalination is mediated by Na+, H+ exchanger-2 in the gulf toadfish (Opsanus beta)

(2014) Andrew J. Esbaugh et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

The complete mitogenome ofPampus argenteus(Perciformes: Stromateidae)

(2014) Yuan Li et al.   Mitochondrial DNA

Mitochondrial ATPase 6/8 genes to infer the population genetic structure of silver pomfret fishPampus argenteusalong the Indian waters

(2014) P. R. Divya et al.   Mitochondrial DNA

Quantitative Molecular Phenotyping of Gill Remodeling in a Cichlid Fish Responding to Salinity Stress

(2013) Dietmar Kültz et al.   MOLECULAR & CELLULAR PROTEOMICS

Transcriptome Profiling Reveals Th17-Like Immune Responses Induced in Zebrafish Bath-Vaccinated with a Live Attenuated Vibrio anguillarum

(2013) Hua Zhang et al.   PLoS One

Molecular cloning, characterization and expression analysis of a miiuy croaker (Miichthys miiuy) CXC chemokine gene resembling the CXCL9/CXCL10/CXCL11

(2011) Yuan-zhi Cheng et al.   FISH & SHELLFISH IMMUNOLOGY

WNK2 Kinase Is a Novel Regulator of Essential Neuronal Cation-Chloride Cotransporters

(2011) Jesse Rinehart et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish

(2010) Li-xin Xiang et al.   BMC GENOMICS

Effects of Diazepam on Gene Expression and Link to Physiological Effects in Different Life Stages in ZebrafishDanio rerio

(2010) Daniela M. Oggier et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Immunologic messenger molecules: Cytokines, interferons, and chemokines

(2009) Scott P. Commins et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

A Cytokine–Cytokine Interaction in the Assembly of Higher-Order Structure and Activation of the Interleukine-3:Receptor Complex

(2009) Raja Dey et al.   PLoS One

Teleost fish osmoregulation: what have we learned since August Krogh, Homer Smith, and Ancel Keys

(2008) David H. Evans   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

The effect of elevated salinity on ‘California’ Mozambique tilapia (Oreochromis mossambicus x O. urolepis hornorum) metabolism

(2008) Brian A. Sardella et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS