Resource availability drives bacterial succession during leaf-litter decomposition in a bromeliad ecosystem

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession

(2018) Rüdiger Ortiz-Álvarez et al.   ISME Journal

Simulated drought regimes reveal community resilience and hydrological thresholds for altered decomposition

(2018) Héctor Rodríguez Pérez et al.   OECOLOGIA

Bacterial Unculturability and the Formation of Intercellular Metabolic Networks

(2017) Samay Pande et al.   TRENDS IN MICROBIOLOGY

Terrestrial support of aquatic food webs depends on light inputs: a geographically-replicated test using tank bromeliads

(2016) Vinicius F. Farjalla et al.   ECOLOGY

Resource-dependent attenuation of species interactions during bacterial succession

(2016) Damian W Rivett et al.   ISME Journal

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

The effects of food web structure on ecosystem function exceeds those of precipitation

(2016) M. Kurtis Trzcinski et al.   JOURNAL OF ANIMAL ECOLOGY

Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition

(2016) Witoon Purahong et al.   MOLECULAR ECOLOGY

Unexpectedly high bacteriochlorophyllaconcentrations in neotropical tank bromeliads

(2016) Anne-Catherine Lehours et al.   Environmental Microbiology Reports

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Bacterial Community Succession in Pine-Wood Decomposition

(2016) Anna M. Kielak et al.   Frontiers in Microbiology

High taxonomic variability despite stable functional structure across microbial communities

(2016) Stilianos Louca et al.   Nature Ecology & Evolution

Predation Threat Alters Composition and Functioning of Bromeliad Ecosystems

(2015) Edd Hammill et al.   ECOSYSTEMS

Decreases in average bacterial community rRNA operon copy number during succession

(2015) Diana R Nemergut et al.   ISME Journal

The contribution of microorganisms and metazoans to mineral nutrition in bromeliads

(2015) Céline Leroy et al.   Journal of Plant Ecology

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The contribution of microorganisms and metazoans to mineral nutrition in bromeliads

(2015) Céline Leroy et al.   Journal of Plant Ecology

Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream

(2015) Molli M. Newman et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Distinct Bacterial Communities Dominate Tropical and Temperate Zone Leaf Litter

(2014) Mincheol Kim et al.   MICROBIAL ECOLOGY

Nutrient Addition Dramatically Accelerates Microbial Community Succession

(2014) Joseph E. Knelman et al.   PLoS One

New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches

(2013) Gurdeep Rastogi et al.   FEMS MICROBIOLOGY LETTERS

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

(2013) Samay Pande et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Food-Web Structure in Relation to Environmental Gradients and Predator-Prey Ratios in Tank-Bromeliad Ecosystems

(2013) Olivier Dézerald et al.   PLoS One

Beyond the Plankton Ecology Group (PEG) Model: Mechanisms Driving Plankton Succession

(2012) Ulrich Sommer et al.   Annual Review of Ecology Evolution and Systematics

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Comparative genomic and physiological analysis provides insights into the role ofAcidobacteriain organic carbon utilization in Arctic tundra soils

(2012) Suman R. Rawat et al.   FEMS MICROBIOLOGY ECOLOGY

Understorey environments influence functional diversity in tank-bromeliad ecosystems

(2012) OLIVIER BROUARD et al.   FRESHWATER BIOLOGY

Ecology of Root Colonizing Massilia (Oxalobacteraceae)

(2012) Maya Ofek et al.   PLoS One

Temporal dynamics of microbial communities on decomposing leaf litter of 10 plant species in relation to decomposition rate

(2012) Sarah R. Bray et al.   SOIL BIOLOGY & BIOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Ant-plant mutualisms promote functional diversity in phytotelm communities

(2011) Régis Céréghino et al.   FUNCTIONAL ECOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Four opportunities for studies of ecological succession

(2011) Karel Prach et al.   TRENDS IN ECOLOGY & EVOLUTION

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils?

(2010) Cindy E. Prescott   BIOGEOCHEMISTRY

Interspecific variation in leaf litter tannins drives decomposition in a tropical rain forest of French Guiana

(2010) Sylvain Coq et al.   ECOLOGY

How effective are non-destructive sampling methods to assess aquatic invertebrate diversity in bromeliads?

(2010) M. Jocque et al.   HYDROBIOLOGIA

The use of chronosequences in studies of ecological succession and soil development

(2010) Lawrence R. Walker et al.   JOURNAL OF ECOLOGY

Aquatic Microbial Habitats Within a Neotropical Rainforest: Bromeliads and pH-Associated Trends in Bacterial Diversity and Composition

(2010) Shana K. Goffredi et al.   MICROBIAL ECOLOGY

In Situ Dynamics of Microbial Communities during Decomposition of Wheat, Rape, and Alfalfa Residues

(2010) Noémie Pascault et al.   MICROBIAL ECOLOGY

Leaf traits and decomposition in tropical rainforests: revisiting some commonly held views and towards a new hypothesis

(2010) Stephan Hättenschwiler et al.   NEW PHYTOLOGIST

Changes through time: integrating microorganisms into the study of succession

(2010) Noah Fierer et al.   RESEARCH IN MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reducing horizontal and vertical diversity in a foodweb triggers extinctions and impacts functions

(2009) Diane S. Srivastava et al.   ECOLOGY LETTERS

Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

(2009) Amanda J. Redford et al.   MICROBIAL ECOLOGY

Ants mediate foliar structure and nitrogen acquisition in a tank-bromeliad

(2009) Céline Leroy et al.   NEW PHYTOLOGIST

Generalized linear mixed models: a practical guide for ecology and evolution

(2009) Benjamin M. Bolker et al.   TRENDS IN ECOLOGY & EVOLUTION

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Structure of aquatic insect communities in tank-bromeliads in a East-Amazonian rainforest in French Guiana

(2008) J. Jabiol et al.   FOREST ECOLOGY AND MANAGEMENT

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH