The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters

Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome

(2015) Jo De Vrieze et al.   WATER RESEARCH

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Microbial Community Dynamics and Stability during an Ammonia-Induced Shift to Syntrophic Acetate Oxidation

(2014) Jeffrey J. Werner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Straw- and slurry-associated prokaryotic communities differ during co-fermentation of straw and swine manure

(2014) Jiabao Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Inoculum selection is crucial to ensure operational stability in anaerobic digestion

(2014) Jo De Vrieze et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Production of poly(hydroxybutyrate–hydroxyvalerate) from waste organics by the two-stage process: Focus on the intermediate volatile fatty acids

(2014) Liang Shen et al.   BIORESOURCE TECHNOLOGY

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters

(2014) Inka Vanwonterghem et al.   ISME Journal

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rate-specific responses of prokaryotic diversity and structure to nitrogen deposition in the Leymus chinensis steppe

(2014) Minjie Yao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial community structure of a pilot-scale thermophilic anaerobic digester treating poultry litter

(2013) Ami M. Smith et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative metagenomic analysis of bacterial populations in three full-scale mesophilic anaerobic manure digesters

(2013) Benoit St-Pierre et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effect of initial pH on mesophilic hydrolysis and acidification of swine manure

(2013) Lin Lin et al.   BIORESOURCE TECHNOLOGY

Molecular characterization of anaerobic digester microbial communities identifies microorganisms that correlate to reactor performance

(2013) Jennifer R. Town et al.   BIORESOURCE TECHNOLOGY

Substrate type drives variation in reactor microbiomes of anaerobic digesters

(2013) Wei Zhang et al.   BIORESOURCE TECHNOLOGY

Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants

(2013) Feng Ju et al.   ENVIRONMENTAL MICROBIOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

(2013) J. Zhou et al.   mBio

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

(2013) Birte Abt et al.   Standards in Genomic Sciences

Co-digestion of manure and whey for in situ biogas upgrading by the addition of H2: process performance and microbial insights

(2012) Gang Luo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus

(2012) T. Looft et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

(2012) Susan M. Huse et al.   PLoS One

Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing

(2011) Antje Rademacher et al.   FEMS MICROBIOLOGY ECOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Bacterial community structures are unique and resilient in full-scale bioenergy systems

(2011) J. J. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A meta-analysis of the microbial diversity observed in anaerobic digesters

(2010) Michael C. Nelson et al.   BIORESOURCE TECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

Household biogas use in rural China: A study of opportunities and constraints

(2009) Yu Chen et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

"Candidatus Cloacamonas Acidaminovorans": Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division

(2008) E. Pelletier et al.   JOURNAL OF BACTERIOLOGY

Inhibition of anaerobic digestion process: A review

(2007) Ye Chen et al.   BIORESOURCE TECHNOLOGY