The NanoZoomer artificial intelligence connectomics pipeline for tracer injection studies of the marmoset brain

A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset

(2019) Meng Kuan Lin et al.   eLife

The Brain/MINDS 3D digital marmoset brain atlas

(2018) Alexander Woodward et al.   Scientific Data

Axonal Projections From the Middle Temporal Area in the Common Marmoset

(2018) Hiroshi Abe et al.   Frontiers in Neuroanatomy

3D reconstruction of brain section images for creating axonal projection maps in marmosets

(2017) Hiroshi Abe et al.   JOURNAL OF NEUROSCIENCE METHODS

Organizing principles for the cerebral cortex network of commissural and association connections

(2017) Larry W. Swanson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template

(2016) Piotr Majka et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Worldwide initiatives to advance brain research

(2016) Sten Grillner et al.   NATURE NEUROSCIENCE

Brain/MINDS: A Japanese National Brain Project for Marmoset Neuroscience

(2016) Hideyuki Okano et al.   NEURON

China Brain Project: Basic Neuroscience, Brain Diseases, and Brain-Inspired Computing

(2016) Mu-ming Poo et al.   NEURON

A Gauss-Seidel Iteration Scheme for Reference-Free 3-D Histological Image Reconstruction

(2015) Simone Gaffling et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

(2015) Leonard Kuan et al.   METHODS

The BRAIN Initiative: developing technology to catalyse neuroscience discovery

(2015) L. A. Jorgenson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Architecture of the cerebral cortical association connectome underlying cognition

(2015) Mihail Bota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

The Design of SimpleITK

(2013) Bradley C. Lowekamp et al.   Frontiers in Neuroinformatics

A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex

(2012) N. T. Markov et al.   CEREBRAL CORTEX

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

CoCoMac 2.0 and the future of tract-tracing databases

(2012) Rembrandt Bakker et al.   Frontiers in Neuroinformatics

Informatics and Data Mining Tools and Strategies for the Human Connectome Project

(2011) Daniel S. Marcus et al.   Frontiers in Neuroinformatics

Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python

(2011) Krzysztof Gorgolewski et al.   Frontiers in Neuroinformatics

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

(2009) Arno Klein et al.   NEUROIMAGE

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

(2007) B AVANTS et al.   MEDICAL IMAGE ANALYSIS