Dynamic incorporation of prior knowledge from multiple domains in biomarker discovery

Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level

(2017) Heewon Park et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A knowledge-based approach for predicting gene–disease associations

(2016) Hongyi Zhou et al.   BIOINFORMATICS

Evolution-informed modeling improves outcome prediction for cancers

(2016) Li Liu et al.   Evolutionary Applications

Androgen receptor variant-driven prostate cancer: clinical implications and therapeutic targeting

(2016) E S Antonarakis et al.   PROSTATE CANCER AND PROSTATIC DISEASES

Joint Bayesian variable and graph selection for regression models with network-structured predictors

(2015) Christine B. Peterson et al.   STATISTICS IN MEDICINE

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

A review of microarray datasets and applied feature selection methods

(2014) V. Bolón-Canedo et al.   INFORMATION SCIENCES

Statistical power and significance testing in large-scale genetic studies

(2014) Pak C. Sham et al.   NATURE REVIEWS GENETICS

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

A Systematic Review and Meta-Analysis of Diagnostic and Prognostic Serum Biomarkers of Colorectal Cancer

(2014) Zhongyu Liu et al.   PLoS One

Evolutionary Balancing Is Critical for Correctly Forecasting Disease-Associated Amino Acid Variants

(2013) L. Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology

(2012) Steven M Hill et al.   BMC BIOINFORMATICS

Evolutionary diagnosis method for variants in personal exomes

(2012) Sudhir Kumar et al.   NATURE METHODS

Phylomedicine: an evolutionary telescope to explore and diagnose the universe of disease mutations

(2011) Sudhir Kumar et al.   TRENDS IN GENETICS

Integrating Biological Knowledge with Gene Expression Profiles for Survival Prediction of Cancer

(2009) Xi Chen et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A Tissue Biomarker Panel Predicting Systemic Progression after PSA Recurrence Post-Definitive Prostate Cancer Therapy

(2008) Tohru Nakagawa et al.   PLoS One