corto: a lightweight R package for gene network inference and master regulator analysis

Pan-Cancer and Single-Cell Modeling of Genomic Alterations Through Gene Expression

(2019) Daniele Mercatelli et al.   Frontiers in Genetics

Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm

(2018) Hongxu Ding et al.   Nature Communications

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information

(2016) Alexander Lachmann et al.   BIOINFORMATICS

Functional characterization of somatic mutations in cancer using network-based inference of protein activity

(2016) Mariano J Alvarez et al.   NATURE GENETICS

Regulators of genetic risk of breast cancer identified by integrative network analysis

(2015) Mauro A A Castro et al.   NATURE GENETICS

Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana

(2013) Federico M. Giorgi et al.   BIOINFORMATICS

Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma

(2013) H Kocak et al.   Cell Death & Disease

Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks

(2008) Antonio Reverter et al.   BIOINFORMATICS

minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information

(2008) Patrick E Meyer et al.   BMC BIOINFORMATICS