Systematic Analysis of Impact of Sampling Regions and Storage Methods on Fecal Gut Microbiome and Metabolome Profiles

Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders

(2018) Dae-Wook Kang et al.   ANAEROBE

Comparative metaproteomics analysis shows altered fecal microbiota signatures in patients with major depressive disorder

(2018) Zhi Chen et al.   NEUROREPORT

Obesity aggravates toxic effect of BPA on spermatogenesis

(2017) Weiyue Hu et al.   ENVIRONMENT INTERNATIONAL

Urinary and Fecal Metabonomics Study of the Protective Effect of Chaihu-Shu-Gan-San on Antibiotic-Induced Gut Microbiota Dysbiosis in Rats

(2017) Meng Yu et al.   Scientific Reports

Comparison of Collection Methods for Fecal Samples in Microbiome Studies

(2016) Emily Vogtmann et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Connections Between the Gut Microbiome and Metabolic Hormones in Early Pregnancy in Overweight and Obese Women

(2016) Luisa F. Gomez-Arango et al.   DIABETES

Assessment of Fecal Microbiota and Fecal Metabolome in Symptomatic Uncomplicated Diverticular Disease of the Colon

(2016) Antonio Tursi et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism

(2016) P Zheng et al.   MOLECULAR PSYCHIATRY

Acetate mediates a microbiome–brain–β-cell axis to promote metabolic syndrome

(2016) Rachel J. Perry et al.   NATURE

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

(2016) Alexandra Zhernakova et al.   SCIENCE

Latitude in sample handling and storage for infant faecal microbiota studies: the elephant in the room?

(2016) Alexander G. Shaw et al.   Microbiome

Gut Microbiota Linked to Sexual Preference and HIV Infection

(2016) Marc Noguera-Julian et al.   EBioMedicine

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

(2016) Se Jin Song et al.   mSystems

Dust Rains Deliver Diverse Assemblages of Microorganisms to the Eastern Mediterranean

(2016) Ghida Nouhad Itani et al.   Scientific Reports

Gut Microbiome Composition in Young Nicaraguan Children During Diarrhea Episodes and Recovery

(2015) Sylvia Becker-Dreps et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Influence of galacto-oligosaccharide mixture (B-GOS) on gut microbiota, immune parameters and metabonomics in elderly persons

(2015) Jelena Vulevic et al.   BRITISH JOURNAL OF NUTRITION

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies

(2015) R. Sinha et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

The networks of human gut microbe–metabolite associations are different between health and irritable bowel syndrome

(2015) Vijay Shankar et al.   ISME Journal

Implications of multiple freeze-thawing on respiratory samples for culture-independent analyses

(2015) Leah Cuthbertson et al.   Journal of Cystic Fibrosis

Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8weeks

(2015) Vanessa L. Hale et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The Human Skin Microbiome Associates with the Outcome of and Is Influenced by Bacterial Infection

(2015) Julia J. van Rensburg et al.   mBio

Evidence that asthma is a developmental origin disease influenced by maternal diet and bacterial metabolites

(2015) Alison N. Thorburn et al.   Nature Communications

Gut mucosal microbiome across stages of colorectal carcinogenesis

(2015) Geicho Nakatsu et al.   Nature Communications

Sample storage conditions significantly influence faecal microbiome profiles

(2015) Jocelyn M Choo et al.   Scientific Reports

Collection media and delayed freezing effects on microbial composition of human stool

(2015) Roberto Flores et al.   Microbiome

Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool

(2015) Monika A. Gorzelak et al.   PLoS One

Comparison of methods for fecal microbiome biospecimen collection

(2014) Christine Dominianni et al.   BMC MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Characterization of the Fecal Microbiota Using High-Throughput Sequencing Reveals a Stable Microbial Community during Storage

(2012) Ian M. Carroll et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY