NCResNet: Noncoding Ribonucleic Acid Prediction Based on a Deep Resident Network of Ribonucleic Acid Sequences

CPPred: coding potential prediction based on the global description of RNA sequence

(2019) Xiaoxue Tong et al.   NUCLEIC ACIDS RESEARCH

An expanded landscape of human long noncoding RNA

(2019) Shuai Jiang et al.   NUCLEIC ACIDS RESEARCH

LncRNAnet: long non-coding RNA identification using deep learning

(2018) Junghwan Baek et al.   BIOINFORMATICS

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

Deep learning in agriculture: A survey

(2018) Andreas Kamilaris et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

MiCEE is a ncRNA-protein complex that mediates epigenetic silencing and nucleolar organization

(2018) Indrabahadur Singh et al.   NATURE GENETICS

A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation

(2018) Adam McDermaid et al.   Frontiers in Genetics

The functions and unique features of long intergenic non-coding RNA

(2017) Julia D. Ransohoff et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Deep Convolutional Neural Networks for Image Classification: A Comprehensive Review

(2017) Waseem Rawat et al.   NEURAL COMPUTATION

FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

(2017) Valentin Wucher et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

(2017) Yu-Jian Kang et al.   NUCLEIC ACIDS RESEARCH

Transcriptional and Post-transcriptional Gene Regulation by Long Non-coding RNA

(2017) Iain M. Dykes et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Deep learning in bioinformatics

(2016) Seonwoo Min et al.   BRIEFINGS IN BIOINFORMATICS

COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features

(2016) Long Hu et al.   NUCLEIC ACIDS RESEARCH

Noncoding RNAs and pancreatic cancer

(2016) Juan-Fei Peng   WORLD JOURNAL OF GASTROENTEROLOGY

iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data

(2016) Kun Sun et al.   BMC GENOMICS

A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance

(2015) Douglas M. Anderson et al.   CELL

A survey on the application of recurrent neural networks to statistical language modeling

(2015) Wim De Mulder et al.   COMPUTER SPEECH AND LANGUAGE

Parametric nonlinear dimensionality reduction using kernel t-SNE

(2015) Andrej Gisbrecht et al.   NEUROCOMPUTING

PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme

(2014) Aimin Li et al.   BMC BIOINFORMATICS

Toddler: An Embryonic Signal That Promotes Cell Movement via Apelin Receptors

(2014) A. Pauli et al.   SCIENCE

ELABELA: A Hormone Essential for Heart Development Signals via the Apelin Receptor

(2013) Serene C. Chng et al.   DEVELOPMENTAL CELL

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames

(2013) E. G. Magny et al.   SCIENCE

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

CpG islands and the regulation of transcription

(2011) A. M. Deaton et al.   GENES & DEVELOPMENT

NONCODE v3.0: integrative annotation of long noncoding RNAs

(2011) D. Bu et al.   NUCLEIC ACIDS RESEARCH

Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis

(2010) T. Kondo et al.   SCIENCE

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS