First Genome of the Brown Alga Undaria pinnatifida: Chromosome-Level Assembly Using PacBio and Hi-C Technologies

Characterization and Immunomodulatory Effects of High Molecular Weight Fucoidan Fraction from the Sporophyll of Undaria pinnatifida in Cyclophosphamide-Induced Immunosuppressed Mice

(2019) Hee Joon Yoo et al.   Marine Drugs

Fucoidan Extracted from Undaria pinnatifida: Source for Nutraceuticals/Functional Foods

(2018) Yu Zhao et al.   Marine Drugs

A review of three decades of research on the invasive kelp Undaria pinnatifida in Australasia: An assessment of its success, impacts and status as one of the world's worst invaders

(2017) Paul M. South et al.   MARINE ENVIRONMENTAL RESEARCH

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

(2017) Olga Dudchenko et al.   SCIENCE

Existence of an intact male life cycle offers a novel way in pure-line crossbreeding in the brown alga Undaria pinnatifida

(2016) Jing Li et al.   JOURNAL OF APPLIED PHYCOLOGY

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Using intron position conservation for homology-based gene prediction

(2016) Jens Keilwagen et al.   NUCLEIC ACIDS RESEARCH

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Saccharina genomes provide novel insight into kelp biology

(2015) Naihao Ye et al.   Nature Communications

Europe’s top 10 invasive species: relative importance of climatic, habitat and socio-economic factors

(2014) Belinda Gallardo   ETHOLOGY ECOLOGY & EVOLUTION

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Zoospore-derived monoecious gametophytes in Undaria pinnatifida (Phaeophyceae)

(2013) Jing Li et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Novel means for variety breeding and sporeling production in the brown seaweedUndaria pinnatifida(Phaeophyceae): Crossing female gametophytes from parthenosporophytes with male gametophyte clones

(2013) Ti Feng Shan et al.   PHYCOLOGICAL RESEARCH

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Responses of vegetative gametophytes ofUndaria pinnatifidato high irradiance in the process of gametogenesis

(2008) Shao Jun Pang et al.   PHYCOLOGICAL RESEARCH

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY