Sparse Convolutional Neural Networks for Genome-Wide Prediction

DSRIG: Incorporating Graphical Structure in the Regularized Modeling of SNP Data

(2019) Matthew Stephenson et al.   Journal of Bioinformatics and Computational Biology

A Guide for Using Deep Learning for Complex Trait Genomic Prediction

(2019) Pérez-Enciso et al.   Genes

Modeling correlated marker effects in genome-wide prediction via Gaussian concentration graph models

(2018) Carlos Alberto Martínez et al.   JOURNAL OF THEORETICAL BIOLOGY

Precision Lasso: Accounting for Correlations and Linear Dependencies in High-Dimensional Genomic Data

(2018) Haohan Wang et al.   BIOINFORMATICS

A deep convolutional neural network approach for predicting phenotypes from genotypes

(2018) Wenlong Ma et al.   PLANTA

A primer on deep learning in genomics

(2018) James Zou et al.   NATURE GENETICS

Accessing marker effects and heritability estimates from genome prediction by Bayesian regularized neural networks

(2016) Leonardo Siqueira Glória et al.   Livestock Science

Taking the Human Out of the Loop: A Review of Bayesian Optimization

(2016) Bobak Shahriari et al.   PROCEEDINGS OF THE IEEE

Probabilistic machine learning and artificial intelligence

(2015) Zoubin Ghahramani   NATURE

Deep learning

(2015) Yann LeCun et al.   NATURE

Machine learning applications in genetics and genomics

(2015) Maxwell W. Libbrecht et al.   NATURE REVIEWS GENETICS

A new approach for efficient genotype imputation using information from relatives

(2014) Mehdi Sargolzaei et al.   BMC GENOMICS

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Regularized Machine Learning in the Genetic Prediction of Complex Traits

(2014) Sebastian Okser et al.   PLoS Genetics

Challenges of Big Data analysis

(2014) Jianqing Fan et al.   National Science Review

A Common Dataset for Genomic Analysis of Livestock Populations

(2012) Matthew A. Cleveland et al.   G3-Genes Genomes Genetics

Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat

(2011) Daniel Gianola et al.   BMC GENETICS

A Bayesian Antedependence Model for Whole Genome Prediction

(2011) W. Yang et al.   GENETICS