An Information Entropy-Based Approach for Computationally Identifying Histone Lysine Butyrylation

Protein Acetylation and Butyrylation Regulate the Phenotype and Metabolic Shifts of the Endospore-formingClostridium acetobutylicum

(2018) Jun-Yu Xu et al.   MOLECULAR & CELLULAR PROTEOMICS

UniProt: the universal protein knowledgebase

(2018) The UniProt Consortium   NUCLEIC ACIDS RESEARCH

Fast prediction of protein methylation sites using a sequence-based feature selection technique

(2017) Leyi Wei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

PLMD: An updated data resource of protein lysine modifications

(2017) Haodong Xu et al.   Journal of Genetics and Genomics

iSuc-PseOpt: Identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset

(2016) Jianhua Jia et al.   ANALYTICAL BIOCHEMISTRY

Computational prediction of species-specific malonylation sites via enhanced characteristic strategy

(2016) Li-Na Wang et al.   BIOINFORMATICS

pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach

(2016) Jianhua Jia et al.   JOURNAL OF THEORETICAL BIOLOGY

SuccinSite: a computational tool for the prediction of protein succinylation sites by exploiting the amino acid patterns and properties

(2016) Md. Mehedi Hasan et al.   Molecular BioSystems

Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters

(2016) Afsaneh Goudarzi et al.   MOLECULAR CELL

Prediction of protein N-formylation and comparison with N-acetylation based on a feature selection method

(2016) You Zhou et al.   NEUROCOMPUTING

iSulf-Cys: Prediction of S-sulfenylation Sites in Proteins with Physicochemical Properties of Amino Acids

(2016) Yan Xu et al.   PLoS One

SuccFind: a novel succinylation sites online prediction tool via enhanced characteristic strategy

(2015) Hao-Dong Xu et al.   BIOINFORMATICS

Identifying protein arginine methylation sites using global features of protein sequence coupled with support vector machine optimized by particle swarm optimization algorithm

(2015) Yan Zhang et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Position-specific prediction of methylation sites from sequence conservation based on information theory

(2015) Yinan Shi et al.   Scientific Reports

iSuc-PseAAC: predicting lysine succinylation in proteins by incorporating peptide position-specific propensity

(2015) Yan Xu et al.   Scientific Reports

SAHA Regulates Histone Acetylation, Butyrylation, and Protein Expression in Neuroblastoma

(2014) Guofeng Xu et al.   JOURNAL OF PROTEOME RESEARCH

The growing landscape of lysine acetylation links metabolism and cell signalling

(2014) Chunaram Choudhary et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers

(2014) Ting Hou et al.   PLoS One

Prediction of S-Nitrosylation Modification Sites Based on Kernel Sparse Representation Classification and mRMR Algorithm

(2014) Guohua Huang et al.   Biomed Research International

iMethyl-PseAAC: Identification of Protein Methylation Sites via a Pseudo Amino Acid Composition Approach

(2014) Wang-Ren Qiu et al.   Biomed Research International

Prediction of pupylation sites using the composition of k-spaced amino acid pairs

(2013) Chun-Wei Tung   JOURNAL OF THEORETICAL BIOLOGY

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Prediction of Methylation Sites Using the Composition of K-Spaced Amino Acid Pairs

(2013) Wenyi Zhang et al.   PROTEIN AND PEPTIDE LETTERS

Position-Specific Analysis and Prediction of Protein Pupylation Sites Based on Multiple Features

(2013) Xiaowei Zhao et al.   Biomed Research International

Computational prediction of N-linked glycosylation incorporating structural properties and patterns

(2012) Gwo-Yu Chuang et al.   BIOINFORMATICS

Computational prediction and analysis of protein γ-carboxylation sites based on a random forest method

(2012) Ning Zhang et al.   Molecular BioSystems

PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features

(2012) Shao-Ping Shi et al.   Molecular BioSystems

PMeS: Prediction of Methylation Sites Based on Enhanced Feature Encoding Scheme

(2012) Shao-Ping Shi et al.   PLoS One

Prediction of Protein Phosphorylation Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2012) Xiaowei Zhao et al.   PLoS One

Prediction of Protein Methylation Sites Using Conditional Random Field

(2012) Yan Xu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of lysine ubiquitination with mRMR feature selection and analysis

(2011) Yudong Cai et al.   AMINO ACIDS

GPS-YNO2: computational prediction of tyrosine nitration sites in proteins

(2011) Zexian Liu et al.   Molecular BioSystems

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

Predicting post-translational lysine acetylation using support vector machines

(2010) F. Gnad et al.   BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Lysine acetylation sites prediction using an ensemble of support vector machine classifiers

(2010) Yan Xu et al.   JOURNAL OF THEORETICAL BIOLOGY

Incorporating structural characteristics for identification of protein methylation sites

(2009) Dray-Ming Shien et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Identification and Verification of Lysine Propionylation and Butyrylation in Yeast Core Histones Using PTMap Software

(2009) Kai Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction

(2009) Jianlin Shao et al.   PLoS One

Proteome-wide prediction of acetylation substrates

(2009) A. Basu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs

(2009) X.-B. Wang et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs

(2008) Yong-Zi Chen et al.   BMC BIOINFORMATICS

Prediction of glycosylation sites using random forests

(2008) Stephen E Hamby et al.   BMC BIOINFORMATICS

A novel method for high accuracy sumoylation site prediction from protein sequences

(2008) Jialin Xu et al.   BMC BIOINFORMATICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH