Genetic Diversity, Population Structure and Linkage Disequilibrium Assessment among International Sunflower Breeding Collections

Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden

(2019) Natalia Aguirre et al.   Agronomy-Basel

The European Nucleotide Archive in 2019

(2019) Clara Amid et al.   NUCLEIC ACIDS RESEARCH

Genomic sequence and copy number evolution during hybrid crop development in sunflowers

(2018) Gregory L. Owens et al.   Evolutionary Applications

High-throughput genotyping-by-sequencing facilitates molecular tagging of a novel rust resistance gene, R15, in sunflower (Helianthus annuus L.)

(2018) G. J. Ma et al.   THEORETICAL AND APPLIED GENETICS

Gene flow in Argentinian sunflowers as revealed by genotyping-by-sequencing data

(2017) Ana Mondon et al.   Evolutionary Applications

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Phenotyping Sunflower Genetic Resources for Sclerotinia Head Rot Response: Assessing Variability for Disease Resistance Breeding

(2017) C. V. Filippi et al.   PLANT DISEASE

Molecular diversity of sunflower populations maintained as genetic resources is affected by multiplication processes and breeding for major traits

(2017) Brigitte Mangin et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide SNP discovery and genetic linkage map construction in sunflower (Helianthus annuus L.) using a genotyping by sequencing (GBS) approach

(2016) Ibrahim Celik et al.   MOLECULAR BREEDING

SNP Discovery and QTL Mapping of Sclerotinia Basal Stalk Rot Resistance in Sunflower using Genotyping-by-Sequencing

(2016) Zahirul I. Talukder et al.   Plant Genome

Population structure and genetic diversity characterization of a sunflower association mapping population using SSR and SNP markers

(2015) Carla V Filippi et al.   BMC PLANT BIOLOGY

Association mapping in sunflower (Helianthus annuus L.) reveals independent control of apical vs. basal branching

(2015) Savithri U Nambeesan et al.   BMC PLANT BIOLOGY

Phenotypic or Molecular Diversity Screening for Conservation of Genetic Resources? An Example from a Genebank Collection of the Temperate Forage Grass Timothy

(2015) Siri Fjellheim et al.   CROP SCIENCE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Genetic characterization of sunflower breeding resources from Argentina: assessing diversity in key open-pollinated and composite populations

(2013) M. V. Moreno et al.   Plant Genetic Resources-Characterization and Utilization

Combined linkage and association mapping of flowering time in Sunflower (Helianthus annuus L.)

(2013) Elena Cadic et al.   THEORETICAL AND APPLIED GENETICS

Association Mapping and the Genomic Consequences of Selection in Sunflower

(2013) Jennifer R. Mandel et al.   PLoS Genetics

synbreed: a framework for the analysis of genomic prediction data using R

(2012) Valentin Wimmer et al.   BIOINFORMATICS

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Random forests for genomic data analysis

(2012) Xi Chen et al.   GENOMICS

Molecular markers in management of ex situ PGR – A case study

(2012) Andreas Börner et al.   JOURNAL OF BIOSCIENCES

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Genetic diversity and population structure in cultivated sunflower and a comparison to its wild progenitor, Helianthus annuus L

(2011) J. R. Mandel et al.   THEORETICAL AND APPLIED GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Identification of Single Nucleotide Polymorphisms and analysis of Linkage Disequilibrium in sunflower elite inbred lines using the candidate gene approach

(2008) Corina M Fusari et al.   BMC PLANT BIOLOGY