Metatranscriptomics Reveals Antibiotic-Induced Resistance Gene Expression in the Murine Gut Microbiota
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Title
Metatranscriptomics Reveals Antibiotic-Induced Resistance Gene Expression in the Murine Gut Microbiota
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 11, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2020-03-06
DOI
10.3389/fmicb.2020.00322
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Note: Only part of the references are listed.- The EMBL-EBI search and sequence analysis tools APIs in 2019
- (2019) Fábio Madeira et al. NUCLEIC ACIDS RESEARCH
- Microbial Metabolism Modulates Antibiotic Susceptibility within the Murine Gut Microbiome
- (2019) Damien J. Cabral et al. Cell Metabolism
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- (2018) Xiaole Yin et al. BIOINFORMATICS
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- (2018) Samiran Banerjee et al. NATURE REVIEWS MICROBIOLOGY
- DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
- (2018) Gustavo Arango-Argoty et al. Microbiome
- Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements
- (2018) Katariina Pärnänen et al. Nature Communications
- Recovery of gut microbiota of healthy adults following antibiotic exposure
- (2018) Albert Palleja et al. Nature Microbiology
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Next-generation approaches to understand and combat the antibiotic resistome
- (2017) Terence S. Crofts et al. NATURE REVIEWS MICROBIOLOGY
- Clustal Omega for making accurate alignments of many protein sequences
- (2017) Fabian Sievers et al. PROTEIN SCIENCE
- Interconnected microbiomes and resistomes in low-income human habitats
- (2016) Erica C. Pehrsson et al. NATURE
- The Human Intestinal Microbiome in Health and Disease
- (2016) Susan V. Lynch et al. NEW ENGLAND JOURNAL OF MEDICINE
- Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
- (2016) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- Antibiotic-Induced Changes in the Intestinal Microbiota and Disease
- (2016) Simone Becattini et al. TRENDS IN MOLECULAR MEDICINE
- Fast and sensitive taxonomic classification for metagenomics with Kaiju
- (2016) Peter Menzel et al. Nature Communications
- Gut Microbiome of an 11th Century A.D. Pre-Columbian Andean Mummy
- (2015) Tasha M. Santiago-Rodriguez et al. PLoS One
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- The Gut Commensal Bacteroides thetaiotaomicron Exacerbates Enteric Infection through Modification of the Metabolic Landscape
- (2014) Meredith M. Curtis et al. Cell Host & Microbe
- Cephalosporinases associated with outer membrane vesicles released by Bacteroides spp. protect gut pathogens and commensals against β-lactam antibiotics
- (2014) Régis Stentz et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes
- (2014) Jennifer R Huddleston Infection and Drug Resistance
- Antibiotic Administration Routes Significantly Influence the Levels of Antibiotic Resistance in Gut Microbiota
- (2013) Lu Zhang et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Country-specific antibiotic use practices impact the human gut resistome
- (2013) K. Forslund et al. GENOME RESEARCH
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
- (2013) Yongfei Hu et al. Nature Communications
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The human microbiome: at the interface of health and disease
- (2012) Ilseung Cho et al. NATURE REVIEWS GENETICS
- Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome
- (2012) Kirandeep Bhullar et al. PLoS One
- Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae
- (2012) B. Stecher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- In-feed antibiotic effects on the swine intestinal microbiome
- (2012) T. Looft et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Human Microbiome in Health and Disease
- (2011) Kathryn J. Pflughoeft et al. Annual Review of Pathology-Mechanisms of Disease
- Antimicrobial resistance and prevalence of resistance genes in intestinal Bacteroidales strains
- (2011) Viviane Nakano et al. Clinics
- Profound Alterations of Intestinal Microbiota following a Single Dose of Clindamycin Results in Sustained Susceptibility to Clostridium difficile-Induced Colitis
- (2011) Charlie G. Buffie et al. INFECTION AND IMMUNITY
- Ecology drives a global network of gene exchange connecting the human microbiome
- (2011) Chris S. Smillie et al. NATURE
- Antibiotic resistance is ancient
- (2011) Vanessa M. D’Costa et al. NATURE
- Two Novel Antibiotic Resistance Genes, tet(44) and ant(6)-Ib, Are Located within a Transferable Pathogenicity Island in Campylobacter fetus subsp. fetus
- (2010) C. Abril et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
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- (2010) Carles Ubeda et al. JOURNAL OF CLINICAL INVESTIGATION
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- (2010) L. Dethlefsen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2010) Morten O.A. Sommer et al. Virulence
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- (2009) M. O. A. Sommer et al. SCIENCE
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- (2008) Les Dethlefsen et al. PLOS BIOLOGY
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