Oropouche virus cases identified in Ecuador using an optimised qRT-PCR informed by metagenomic sequencing

Oropouche Fever: A Review

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Assessment of metagenomic Nanopore and Illumina sequencing for recovering whole genome sequences of chikungunya and dengue viruses directly from clinical samples

(2018) Liana E. Kafetzopoulou et al.   Eurosurveillance

Oropouche orthobunyavirus: Genetic characterization of full-length genomes and development of molecular methods to discriminate natural reassortments

(2018) Márcio Roberto Teixeira Nunes et al.   INFECTION GENETICS AND EVOLUTION

Multiplexed reverse transcription real-time polymerase chain reaction for simultaneous detection of Mayaro, Oropouche, and Oropouche-like viruses

(2017) Felipe Gomes Naveca et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

(2017) Joshua Quick et al.   Nature Protocols

Neutralizing antibodies for orthobunyaviruses in Pantanal, Brazil

(2017) Alex Pauvolid-Corrêa et al.   PLoS Neglected Tropical Diseases

Zika Virus and Chikungunya Virus CoInfections: A Series of Three Cases from a Single Center in Ecuador

(2016) Hector Zambrano et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador

(2016) Veronica Barragan et al.   PLoS Neglected Tropical Diseases

Assessment of the Utility of Whole Genome Sequencing of Measles Virus in the Characterisation of Outbreaks

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Orthobunyaviruses: recent genetic and structural insights

(2014) Richard M. Elliott   NATURE REVIEWS MICROBIOLOGY

Identification of Oropouche Orthobunyavirus in the Cerebrospinal Fluid of Three Patients in the Amazonas, Brazil

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

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RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Iquitos Virus: A Novel Reassortant Orthobunyavirus Associated with Human Illness in Peru

(2011) Patricia V. Aguilar et al.   PLoS Neglected Tropical Diseases

Hepatitis A virus seroprevalence by age and world region, 1990 and 2005

(2010) Kathryn H. Jacobsen et al.   VACCINE

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

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Real-time multiplex PCR assay for detection and differentiation of rickettsiae and orientiae

(2008) Daniel H. Paris et al.   TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE