CRISPR Interference of a Clonally Variant GC-Rich Noncoding RNA Family Leads to General Repression of var Genes in Plasmodium falciparum

Transcriptome-wide dynamics of extensive m6A mRNA methylation during Plasmodium falciparum blood-stage development

(2019) Sebastian Baumgarten et al.   Nature Microbiology

Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum

(2018) José Luis Ruiz et al.   NUCLEIC ACIDS RESEARCH

Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria

(2018) Thomas D. Otto et al.   Nature Microbiology

CRISPR/Cas9 Genome Editing Reveals That the Intron Is Not Essential for var2csa Gene Activation or Silencing in Plasmodium falciparum

(2017) Jessica M. Bryant et al.   mBio

Enhancer SINEs Link Pol III to Pol II Transcription in Neurons

(2017) Cristina Policarpi et al.   Cell Reports

Epigenetic Regulation of Virulence Gene Expression in Parasitic Protozoa

(2016) Manoj T. Duraisingh et al.   Cell Host & Microbe

Trans-acting GC-rich non-coding RNA atvarexpression site modulates gene counting in malaria parasite

(2016) Julien Guizetti et al.   NUCLEIC ACIDS RESEARCH

RNA Polymerase III Advances: Structural and tRNA Functional Views

(2016) Aneeshkumar G. Arimbasseri et al.   TRENDS IN BIOCHEMICAL SCIENCES

Dual regulatory effects of non-coding GC-rich elements on the expression of virulence genes in malaria parasites

(2015) Guiying Wei et al.   INFECTION GENETICS AND EVOLUTION

RIFINs are adhesins implicated in severe Plasmodium falciparum malaria

(2015) Suchi Goel et al.   NATURE MEDICINE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Antisense long noncoding RNAs regulatevargene activation in the malaria parasitePlasmodium falciparum

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Ape parasite origins of human malaria virulence genes

(2015) Daniel B. Larremore et al.   Nature Communications

Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system

(2014) Mehdi Ghorbal et al.   NATURE BIOTECHNOLOGY

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

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Silence, activate, poise and switch! Mechanisms of antigenic variation inPlasmodium falciparum

(2013) Julien Guizetti et al.   CELLULAR MICROBIOLOGY

A quantitative analysis of Plasmodium falciparum transfection using DNA-loaded erythrocytes

(2013) Sandra Hasenkamp et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum

(2013) Lubin Jiang et al.   NATURE

Identification of RNA polymerase III-transcribed genes in eukaryotic genomes

(2012) Giorgio Dieci et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

PfSET10, a Plasmodium falciparum Methyltransferase, Maintains the Active var Gene in a Poised State during Parasite Division

(2012) Jennifer C. Volz et al.   Cell Host & Microbe

HP1Swi6 Mediates the Recognition and Destruction of Heterochromatic RNA Transcripts

(2012) Claudia Keller et al.   MOLECULAR CELL

Erasing the Epigenetic Memory and Beginning to Switch—The Onset of Antigenic Switching of var Genes in Plasmodium falciparum

(2012) Yair Fastman et al.   PLoS One

Integrative genomics viewer

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BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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Genome-wide Analysis of Heterochromatin Associates Clonally Variant Gene Regulation with Perinuclear Repressive Centers in Malaria Parasites

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Clonally variant gene families inPlasmodium falciparumshare a common activation factor

(2009) Cali A. Howitt et al.   MOLECULAR MICROBIOLOGY

Antigenic Variation in Plasmodium falciparum

(2008) Artur Scherf et al.   Annual Review of Microbiology

Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum

(2008) C. Epp et al.   RNA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY