Comparison of CRISPR and Marker-Based Methods for the Engineering of Phage T7

Riding the wave of genomics to investigate aquatic coliphage diversity and activity

(2019) Slawomir Michniewski et al.   ENVIRONMENTAL MICROBIOLOGY

Efficient genome engineering of a virulent Klebsiella bacteriophage using CRISPR-Cas9

(2018) Juntao Shen et al.   JOURNAL OF VIROLOGY

The Current State and Future of CRISPR-Cas9 gRNA Design Tools

(2018) Laurence O. W. Wilson et al.   Frontiers in Pharmacology

Optimizing DNA transduction by selection of mutations that evade bacterial defense systems

(2018) Oren Auster et al.   RNA Biology

Highly efficient genome editing by CRISPR-Cpf1 using CRISPR RNA with a uridinylate-rich 3′-overhang

(2018) Su Bin Moon et al.   Nature Communications

Extending the Host Range of Bacteriophage Particles for DNA Transduction

(2017) Ido Yosef et al.   MOLECULAR CELL

Communication between viruses guides lysis–lysogeny decisions

(2017) Zohar Erez et al.   NATURE

Refined sgRNA efficacy prediction improves large- and small-scale CRISPR–Cas9 applications

(2017) Maurice Labuhn et al.   NUCLEIC ACIDS RESEARCH

Strategies for Editing Virulent Staphylococcal Phages Using CRISPR-Cas10

(2017) S. M. Nayeemul Bari et al.   ACS Synthetic Biology

Genome Engineering of Virulent Lactococcal Phages Using CRISPR-Cas9

(2017) Marie-Laurence Lemay et al.   ACS Synthetic Biology

Engineering of Bacteriophage T4 Genome Using CRISPR-Cas9

(2017) Pan Tao et al.   ACS Synthetic Biology

Cas-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cas9

(2016) Jeongbin Park et al.   BIOINFORMATICS

Cas3 is a limiting factor for CRISPR-Cas immunity in Escherichia coli cells lacking H-NS

(2016) Kristina Majsec et al.   BMC MICROBIOLOGY

Alternatives to antibiotics—a pipeline portfolio review

(2016) Lloyd Czaplewski et al.   LANCET INFECTIOUS DISEASES

Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes

(2016) Branko Rihtman et al.   PeerJ

Polylysogeny magnifies competitiveness of a bacterial pathogenin vivo

(2015) Nicola Burns et al.   Evolutionary Applications

Functional Analysis of Bacteriophage Immunity through a Type I-E CRISPR-Cas System in Vibrio cholerae and Its Application in Bacteriophage Genome Engineering

(2015) Allison M. Box et al.   JOURNAL OF BACTERIOLOGY

Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9

(2015) Alexandra L. Bryson et al.   mBio

Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing

(2015) Hiroki Ando et al.   Cell Systems

CRISPR-Cas: an efficient tool for genome engineering of virulent bacteriophages

(2014) Bruno Martel et al.   NUCLEIC ACIDS RESEARCH

Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression

(2014) Michelle L. Luo et al.   NUCLEIC ACIDS RESEARCH

CRISPR/Cas9-Mediated Phage Resistance Is Not Impeded by the DNA Modifications of Phage T4

(2014) Stephanie J. Yaung et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Efficient engineering of a bacteriophage genome using the type I-E CRISPR-Cas system

(2014) Ruth Kiro et al.   RNA Biology

Outer Membrane Proteins Ail and OmpF of Yersinia pestis Are Involved in the Adsorption of T7-Related Bacteriophage Yep-phi

(2013) X. Zhao et al.   JOURNAL OF VIROLOGY

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

(2013) Wenyan Jiang et al.   NATURE BIOTECHNOLOGY

Gene product 0.4 increases bacteriophage T7 competitiveness by inhibiting host cell division

(2013) R. Kiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protospacer recognition motifs

(2013) Shiraz A. Shah et al.   RNA Biology

Genetic Screens in Human Cells Using the CRISPR-Cas9 System

(2013) Tim Wang et al.   SCIENCE

Characterising the biology of novel lytic bacteriophages infecting multidrug resistant Klebsiella pneumoniae

(2013) Agata Kęsik-Szeloch et al.   Virology Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

A fully decompressed synthetic bacteriophage øX174 genome assembled and archived in yeast

(2012) Paul R. Jaschke et al.   VIROLOGY

Bacteriophage recombineering in the lytic state using the lambda red recombinases

(2011) Tamás Fehér et al.   Microbial Biotechnology

Phage Therapy Pharmacology

(2010) Stephen Abedon et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

The complete genome sequence and proteomics of Yersinia pestis phage Yep-phi

(2010) X. Zhao et al.   JOURNAL OF GENERAL VIROLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

BRED: A Simple and Powerful Tool for Constructing Mutant and Recombinant Bacteriophage Genomes

(2008) Laura J. Marinelli et al.   PLoS One

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

(2008) Carola Engler et al.   PLoS One

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

(2008) S. J. J. Brouns et al.   SCIENCE