An empirically derived method for measuring human gut microbiome alpha diversity: Demonstrated utility in predicting health-related outcomes among a human clinical sample

Biological Systems Are a Common Link Between Alcohol Use Disorder and Co-Occurring Psychiatric and Medical Conditions

(2018) Sarah L. Hagerty et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Reduced microbiome alpha diversity in young patients with ADHD

(2018) Alexander Prehn-Kristensen et al.   PLoS One

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Gut microbiome alterations in Alzheimer’s disease

(2017) Nicholas M. Vogt et al.   Scientific Reports

Population-level analysis of gut microbiome variation

(2016) Gwen Falony et al.   SCIENCE

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets

(2016) Jai Ram Rideout et al.   GigaScience

Altered fecal microbiota composition in patients with major depressive disorder

(2015) Haiyin Jiang et al.   BRAIN BEHAVIOR AND IMMUNITY

Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity

(2014) Sophie Leclercq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories

(2014) E. Kathryn Morris et al.   Ecology and Evolution

Scale-dependent effect sizes of ecological drivers on biodiversity: why standardised sampling is not enough

(2013) Jonathan M. Chase et al.   ECOLOGY LETTERS

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

The role of gut microbiota in the gut-brain axis: current challenges and perspectives

(2013) Xiao Chen et al.   Protein & Cell

Colonic microbiome is altered in alcoholism

(2012) Ece A. Mutlu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Role of intestinal permeability and inflammation in the biological and behavioral control of alcohol-dependent subjects

(2012) Sophie Leclercq et al.   BRAIN BEHAVIOR AND IMMUNITY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome

(2012) Dirk Gevers et al.   PLOS BIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Old and new challenges in using species diversity for assessing biodiversity

(2011) A. Chiarucci et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Extrapolation of Urn Models via Poissonization: Accurate Measurements of the Microbial Unknown

(2011) Manuel E. Lladser et al.   PLoS One

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Alcohol, inflammation, and gut-liver-brain interactions in tissue damage and disease development

(2010) H Joe Wang   WORLD JOURNAL OF GASTROENTEROLOGY