Myosoft: An automated muscle histology analysis tool using machine learning algorithm utilizing FIJI/ImageJ software

Open-CSAM, a new tool for semi-automated analysis of myofiber cross-sectional area in regenerating adult skeletal muscle

(2019) Thibaut Desgeorges et al.   Skeletal Muscle

Automated image-analysis method for the quantification of fiber morphometry and fiber type population in human skeletal muscle

(2019) Perla C. Reyes-Fernandez et al.   Skeletal Muscle

MyoVision: software for automated high-content analysis of skeletal muscle immunohistochemistry

(2018) Yuan Wen et al.   JOURNAL OF APPLIED PHYSIOLOGY

MuscleJ: a high-content analysis method to study skeletal muscle with a new Fiji tool

(2018) Alicia Mayeuf-Louchart et al.   Skeletal Muscle

A novel computational method for automatic segmentation, quantification and comparative analysis of immunohistochemically labeled tissue sections

(2018) Elena Casiraghi et al.   BMC BIOINFORMATICS

MIAQuant, a novel system for automatic segmentation, measurement, and localization comparison of different biomarkers from serialized histological slices

(2017) Elena Casiraghi et al.   EUROPEAN JOURNAL OF HISTOCHEMISTRY

A Rapid Automated Protocol for Muscle Fiber Population Analysis in Rat Muscle Cross Sections Using Myosin Heavy Chain Immunohistochemistry

(2017) Konstantin D. Bergmeister et al.   Jove-Journal of Visualized Experiments

Deep models for brain EM image segmentation: novel insights and improved performance

(2016) Ahmed Fakhry et al.   BIOINFORMATICS

Locality Sensitive Deep Learning for Detection and Classification of Nuclei in Routine Colon Cancer Histology Images

(2016) Korsuk Sirinukunwattana et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Image analysis and machine learning in digital pathology: Challenges and opportunities

(2016) Anant Madabhushi et al.   MEDICAL IMAGE ANALYSIS

Automated muscle fiber type population analysis with ImageJ of whole rat muscles using rapid myosin heavy chain immunohistochemistry

(2016) Konstantin D. Bergmeister et al.   MUSCLE & NERVE

Skeletal muscle fiber type: using insights from muscle developmental biology to dissect targets for susceptibility and resistance to muscle disease

(2016) Jared Talbot et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Molecular determinants of force production in human skeletal muscle fibers: effects of myosin isoform expression and cross-sectional area

(2015) Mark S. Miller et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Animal models of Duchenne muscular dystrophy: from basic mechanisms to gene therapy

(2015) J. W. McGreevy et al.   Disease Models & Mechanisms

Skeletal Muscle: A Brief Review of Structure and Function

(2014) Walter R. Frontera et al.   CALCIFIED TISSUE INTERNATIONAL

Unilateral Muscle Overuse Causes Bilateral Changes in Muscle Fiber Composition and Vascular Supply

(2014) Yafeng Song et al.   PLoS One

SMASH – semi-automatic muscle analysis using segmentation of histology: a MATLAB application

(2014) Lucas R Smith et al.   Skeletal Muscle

Motor Unit Changes Seen With Skeletal Muscle Sarcopenia in Oldest Old Rats

(2013) T. A. Kung et al.   JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The Effects of Endurance, Strength, and Power Training on Muscle Fiber Type Shifting

(2011) Jacob M. Wilson et al.   JOURNAL OF STRENGTH AND CONDITIONING RESEARCH

Fiber Types in Mammalian Skeletal Muscles

(2011) Stefano Schiaffino et al.   PHYSIOLOGICAL REVIEWS

Machines that learn to segment images: a crucial technology for connectomics

(2010) Viren Jain et al.   CURRENT OPINION IN NEUROBIOLOGY

Inducible lineage tracing of Pax7-descendant cells reveals embryonic origin of adult satellite cells

(2010) Christoph Lepper et al.   GENESIS

Changes in muscle size and MHC composition in response to resistance exercise with heavy and light loading intensity

(2008) L. Holm et al.   JOURNAL OF APPLIED PHYSIOLOGY