Differential evolution in 3′UTRs leads to specific gene expression in Staphylococcus

A non‐coding RNA from the intercellular adhesin ( ica ) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesin ( PIA )‐mediated biofilm formation

(2019) Maike F. Lerch et al.   MOLECULAR MICROBIOLOGY

A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus

(2019) Delphine Bronesky et al.   EMBO JOURNAL

Finding of Agr Phase Variants in Staphylococcus aureus

(2019) Vishal Gor et al.   mBio

RNA-binding proteins in bacteria

(2018) Erik Holmqvist et al.   NATURE REVIEWS MICROBIOLOGY

High-resolution RNA 3′-ends mapping of bacterial Rho-dependent transcripts

(2018) Daniel Dar et al.   NUCLEIC ACIDS RESEARCH

The regulon of the RNA chaperone CspA and its auto-regulation in Staphylococcus aureus

(2018) Carlos J Caballero et al.   NUCLEIC ACIDS RESEARCH

CRP-cAMP mediates silencing of Salmonella virulence at the post-transcriptional level

(2018) Youssef El Mouali et al.   PLoS Genetics

3′untranslated regions: regulation at the end of the road

(2018) Youssef El Mouali et al.   CURRENT GENETICS

Stem-loops direct precise processing of 3′ UTR-derived small RNA MicL

(2018) Taylor B Updegrove et al.   NUCLEIC ACIDS RESEARCH

Regulation of acetate metabolism and coordination with the TCA cycle via a processed small RNA

(2018) François De Mets et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AU-Rich Long 3′ Untranslated Region Regulates Gene Expression in Bacteria

(2018) Ju-Ping Zhao et al.   Frontiers in Microbiology

Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species

(2017) Harry A. Thorpe et al.   GENETICS

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

(2017) Yanjie Chao et al.   MOLECULAR CELL

Initiating ribosomes and a 5′/3′-UTR interaction control ribonuclease action to tightly couple B. subtilis hbs mRNA stability with translation

(2017) Frédérique Braun et al.   NUCLEIC ACIDS RESEARCH

Regulatory 3′ Untranslated Regions of Bacterial mRNAs

(2017) Gai-Xian Ren et al.   Frontiers in Microbiology

Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species

(2017) Harry A. Thorpe et al.   GENETICS

Fresh layers of RNA-mediated regulation in Gram-positive bacteria

(2016) Philippe Bouloc et al.   CURRENT OPINION IN MICROBIOLOGY

RpiRc Is a Pleiotropic Effector of Virulence Determinant Synthesis and Attenuates Pathogenicity in Staphylococcus aureus

(2016) Rosmarie Gaupp et al.   INFECTION AND IMMUNITY

A 3′ UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response

(2016) Yanjie Chao et al.   MOLECULAR CELL

The hmsT 3′ untranslated region mediates c-di-GMP metabolism and biofilm formation in Y ersinia pestis

(2016) Hui Zhu et al.   MOLECULAR MICROBIOLOGY

Regulation of a polyamine transporter by the conserved 3′ UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides inRhodobacter sphaeroides

(2016) Tao Peng et al.   RNA Biology

Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria

(2016) D. Dar et al.   SCIENCE

Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus

(2016) Ronan K. Carroll et al.   mBio

Staphylococcus aureus Coordinates Leukocidin Expression and Pathogenesis by Sensing Metabolic Fluxes via RpiRc

(2016) Divya Balasubramanian et al.   mBio

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

(2016) Sandeep J. Joseph et al.   PeerJ

Regulatory small RNAs from the 3′ regions of bacterial mRNAs

(2015) Masatoshi Miyakoshi et al.   CURRENT OPINION IN MICROBIOLOGY

Genome Rearrangements Can Make and Break Small RNA Genes

(2015) Rahul Raghavan et al.   Genome Biology and Evolution

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Spot 42 RNA: A regulatory small RNA with roles in the central metabolism

(2015) Cecilie Bækkedal et al.   RNA Biology

De novo assembly of bacterial transcriptomes from RNA-seq data

(2015) Brian Tjaden   GENOME BIOLOGY

Evolution of Resistance to a Last-Resort Antibiotic in Staphylococcus aureus via Bacterial Competition

(2014) Gudrun Koch et al.   CELL

MicL, a new  E-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein

(2014) M. S. Guo et al.   GENES & DEVELOPMENT

A eukaryotic-like 3′ untranslated region in Salmonella enterica hilD mRNA

(2014) Javier López-Garrido et al.   NUCLEIC ACIDS RESEARCH

The iron-sensing aconitase B binds its own mRNA to prevent sRNA-induced mRNA cleavage

(2014) Julie-Anna M. Benjamin et al.   NUCLEIC ACIDS RESEARCH

Transfer of noncoding DNA drives regulatory rewiring in bacteria

(2014) Yaara Oren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SyntTax: a web server linking synteny to prokaryotic taxonomy

(2013) Jacques Oberto   BMC BIOINFORMATICS

Base Pairing Interaction between 5′- and 3′-UTRs Controls icaR mRNA Translation in Staphylococcus aureus

(2013) Igor Ruiz de los Mozos et al.   PLoS Genetics

3′ Untranslated Region-Dependent Degradation of theaceAmRNA, Encoding the Glyoxylate Cycle Enzyme Isocitrate Lyase, by RNase E/G in Corynebacterium glutamicum

(2012) Tomoya Maeda et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Variation in the genomic locations and sequence conservation of STAR elements among staphylococcal species provides insight into DNA repeat evolution

(2012) Joanne Purves et al.   BMC GENOMICS

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

An effort to make sense of antisense transcription in bacteria

(2012) Iñigo Lasa et al.   RNA Biology

RpiR Homologues May Link Staphylococcus aureus RNAIII Synthesis and Pentose Phosphate Pathway Regulation

(2011) Yefei Zhu et al.   JOURNAL OF BACTERIOLOGY

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Junker: An Intergenic Explorer for Bacterial Genomes

(2011) Jayavel Sridhar et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Single-Cell Techniques Using Chromosomally Tagged Fluorescent Bacteria To Study Listeria monocytogenes Infection Processes

(2010) D. Balestrino et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ongoing purifying selection on intergenic spacers in group A streptococcus

(2010) Haiwei Luo et al.   INFECTION GENETICS AND EVOLUTION

RNAs: regulators of bacterial virulence

(2010) Jonas Gripenland et al.   NATURE REVIEWS MICROBIOLOGY

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions

(2010) Marie Beaume et al.   PLoS One

The relationship between the evolution of microRNA targets and the length of their UTRs

(2009) Chao Cheng et al.   BMC GENOMICS

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells

(2009) Christine Mayr et al.   CELL

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH