Broadly applicable oligonucleotide mass spectrometry for the analysis of RNA writers and erasers in vitro

Production and Application of Stable Isotope-Labeled Internal Standards for RNA Modification Analysis

(2019) Kayla Borland et al.   Genes

Methods for RNA Modification Mapping Using Deep Sequencing: Established and New Emerging Technologies

(2019) Yuri Motorin et al.   Genes

Oligonucleotide analysis by hydrophilic interaction liquid chromatography-mass spectrometry in the absence of ion-pair reagents

(2019) Peter A. Lobue et al.   JOURNAL OF CHROMATOGRAPHY A

Analysis of oligonucleotides by ion-pair reversed-phase liquid chromatography coupled with positive mode electrospray ionization mass spectrometry

(2019) Guofeng Weng et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Formation of tRNA wobble inosine in humans is disrupted by a millennia-old mutation causing intellectual disability

(2019) Jillian Ramos et al.   MOLECULAR AND CELLULAR BIOLOGY

A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure

(2018) Christina Dal Magro et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Quantification of dsRNA using stable isotope labeling dilution liquid chromatography/mass spectrometry

(2018) An-Wen Kung et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Differential m6A, m6Am, and m1A Demethylation Mediated by FTO in the Cell Nucleus and Cytoplasm

(2018) Jiangbo Wei et al.   MOLECULAR CELL

NAIL-MS in E. coli Determines the Source and Fate of Methylation in tRNA

(2018) Valentin F. Reichle et al.   CHEMBIOCHEM

Stable Isotope Labeling for Improved Comparative Analysis of RNA Digests by Mass Spectrometry

(2017) Mellie June Paulines et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

TRMT1-Catalyzed tRNA Modifications Are Required for Redox Homeostasis To Ensure Proper Cellular Proliferation and Oxidative Stress Survival

(2017) Joshua M. Dewe et al.   MOLECULAR AND CELLULAR BIOLOGY

Label-free, direct localization and relative quantitation of the RNA nucleobase methylations m6A, m5C, m3U, and m5U by top-down mass spectrometry

(2017) Heidelinde Glasner et al.   NUCLEIC ACIDS RESEARCH

Observing the fate of tRNA and its modifications by nucleic acid isotope labeling mass spectrometry: NAIL-MS

(2017) Matthias Heiss et al.   RNA Biology

AlkB homolog 3-mediated tRNA demethylation promotes protein synthesis in cancer cells

(2017) Yuko Ueda et al.   Scientific Reports

ALKBH1-Mediated tRNA Demethylation Regulates Translation

(2016) Fange Liu et al.   CELL

Detection of nucleic acid modifications by chemical reagents

(2016) Matthias Heiss et al.   RNA Biology

Bidirectional Direct Sequencing of Noncanonical RNA by Two-Dimensional Analysis of Mass Chromatograms

(2015) Anders Björkbom et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Inosine modifications in human tRNAs are incorporated at the precursor tRNA level

(2015) Adrian Gabriel Torres et al.   NUCLEIC ACIDS RESEARCH

A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure ofSchizosaccharomyces pomberibosomal RNAs

(2015) Masato Taoka et al.   NUCLEIC ACIDS RESEARCH

On the mechanism of RNA phosphodiester backbone cleavage in the absence of solvent

(2015) C. Riml et al.   NUCLEIC ACIDS RESEARCH

The identification and characterization of non-coding and coding RNAs and their modified nucleosides by mass spectrometry

(2015) Kirk W Gaston et al.   RNA Biology

Profiling of RNA modifications by multiplexed stable isotope labelling

(2014) Stefanie Kellner et al.   CHEMICAL COMMUNICATIONS

Quantitative Analysis of rRNA Modifications Using Stable Isotope Labeling and Mass Spectrometry

(2014) Anna M. Popova et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Characterization of nucleic acids by tandem mass spectrometry - The second decade (2004-2013): From DNA to RNA and modified sequences

(2014) Stefan Schürch   MASS SPECTROMETRY REVIEWS

Absolute and relative quantification of RNA modifications via biosynthetic isotopomers

(2014) Stefanie Kellner et al.   NUCLEIC ACIDS RESEARCH

A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs

(2014) T. Suzuki et al.   NUCLEIC ACIDS RESEARCH

A multidimensional platform for the purification of non-coding RNA species

(2013) Yok Hian Chionh et al.   NUCLEIC ACIDS RESEARCH

Method for Comparative Analysis of Ribonucleic Acids Using Isotope Labeling and Mass Spectrometry

(2012) Siwei Li et al.   ANALYTICAL CHEMISTRY

Characterization of Modified RNA by Top-Down Mass Spectrometry

(2012) Monika Taucher et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility

(2012) Guanqun Zheng et al.   MOLECULAR CELL

Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage

(2012) P. B. Cattenoz et al.   RNA

Characterization and Quantification of RNA Post-transcriptional Modifications Using Stable Isotope Labeling of RNA in Conjunction with Mass Spectrometry Analysis

(2011) Sakharam P. Waghmare et al.   ANALYTICAL CHEMISTRY

N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO

(2011) Guifang Jia et al.   Nature Chemical Biology

Identification, localization, and relative quantitation of pseudouridine in RNA by tandem mass spectrometry of hydrolysis products

(2010) Monika Taucher et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Top-down mass spectrometry for sequencing of larger (up to 61 nt) RNA by CAD and EDD

(2010) Monika Taucher et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea

(2010) Yoshiho Ikeuchi et al.   Nature Chemical Biology

Structural insights into the function of aminoglycoside-resistance A1408 16S rRNA methyltransferases from antibiotic-producing and human pathogenic bacteria

(2010) Rachel Macmaster et al.   NUCLEIC ACIDS RESEARCH

Parallel Isotope-Based Quantification of Modified tRNA Nucleosides

(2009) Tobias Brückl et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Top-down tandem mass spectrometry of tRNA via ion trap collision-induced dissociation

(2009) Teng-Yi Huang et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Minimizing base loss and internal fragmentation in collisionally activated dissociation of multiply deprotonated RNA

(2009) Monika Taucher et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Multiple endonucleases improve MALDI-MS signature digestion product detection of bacterial transfer RNAs

(2008) Mahmud Hossain et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Sequence Confirmation of Modified Oligonucleotides Using Chemical Degradation, Electrospray Ionization, Time-of-Flight, and Tandem Mass Spectrometry

(2008) Julie Farand et al.   ANALYTICAL CHEMISTRY