Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 48, Issue 3, Pages 1146-1163
Publisher
Oxford University Press (OUP)
Online
2019-12-06
DOI
10.1093/nar/gkz1173
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Characterizing the Major Structural Variant Alleles of the Human Genome
- (2019) Peter A. Audano et al. CELL
- Genomic Analysis in the Age of Human Genome Sequencing
- (2019) Tuuli Lappalainen et al. CELL
- Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication
- (2019) Diane A. Flasch et al. CELL
- The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection
- (2019) Tania Sultana et al. MOLECULAR CELL
- Multi-platform discovery of haplotype-resolved structural variation in human genomes
- (2019) Mark J. P. Chaisson et al. Nature Communications
- RNA ligation precedes the retrotransposition of U6/LINE-1 chimeric RNA
- (2019) John B. Moldovan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication
- (2018) Amanda L. Pendleton et al. BMC BIOLOGY
- Targeted deletion of a 170-kb cluster of LINE-1 repeats and implications for regional control
- (2018) Miguel L. Soares et al. GENOME RESEARCH
- Nanopore sequencing and assembly of a human genome with ultra-long reads
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- Accurate detection of complex structural variations using single-molecule sequencing
- (2018) Fritz J. Sedlazeck et al. NATURE METHODS
- Spliced integrated retrotransposed element (SpIRE) formation in the human genome
- (2018) Peter A. Larson et al. PLOS BIOLOGY
- The case for not masking away repetitive DNA
- (2018) R. Keith Slotkin Mobile DNA
- The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology
- (2017) Eugene J. Gardner et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Mobile DNA in Health and Disease
- (2017) Haig H. Kazazian et al. NEW ENGLAND JOURNAL OF MEDICINE
- Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network
- (2017) Michael J. McConnell et al. SCIENCE
- L1 Mosaicism in Mammals: Extent, Effects, and Evolution
- (2017) Geoffrey J. Faulkner et al. TRENDS IN GENETICS
- The Role of Somatic L1 Retrotransposition in Human Cancers
- (2017) Emma Scott et al. Viruses-Basel
- A recurrence-based approach for validating structural variation using long-read sequencing technology
- (2017) Xuefang Zhao et al. GigaScience
- svclassify: a method to establish benchmark structural variant calls
- (2016) Hemang Parikh et al. BMC GENOMICS
- A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer
- (2016) Emma C. Scott et al. GENOME RESEARCH
- A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
- (2016) Michael A. Eberle et al. GENOME RESEARCH
- L1-associated genomic regions are deleted in somatic cells of the healthy human brain
- (2016) Jennifer A Erwin et al. NATURE NEUROSCIENCE
- Resolving rates of mutation in the brain using single-neuron genomics
- (2016) Gilad D Evrony et al. eLife
- Restricting retrotransposons: a review
- (2016) John L. Goodier Mobile DNA
- Roles for retrotransposon insertions in human disease
- (2016) Dustin C. Hancks et al. Mobile DNA
- Extensive sequencing of seven human genomes to characterize benchmark reference materials
- (2016) Justin M. Zook et al. Scientific Data
- MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
- (2015) Marghoob Mohiyuddin et al. BIOINFORMATICS
- Ubiquitous L1 Mosaicism in Hippocampal Neurons
- (2015) Kyle R. Upton et al. CELL
- A 3′ Poly(A) Tract Is Required for LINE-1 Retrotransposition
- (2015) Aurélien J. Doucet et al. MOLECULAR CELL
- An integrated map of structural variation in 2,504 human genomes
- (2015) Peter H. Sudmant et al. NATURE
- A global reference for human genetic variation
- (2015) Richard A. Gibbs et al. NATURE
- Interactive analysis and assessment of single-cell copy-number variations
- (2015) Tyler Garvin et al. NATURE METHODS
- Cell Lineage Analysis in Human Brain Using Endogenous Retroelements
- (2015) Gilad D. Evrony et al. NEURON
- Calibrating genomic and allelic coverage bias in single-cell sequencing
- (2015) Cheng-Zhong Zhang et al. Nature Communications
- UpSet: Visualization of Intersecting Sets
- (2014) Alexander Lex et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- Increased L1 Retrotransposition in the Neuronal Genome in Schizophrenia
- (2014) Miki Bundo et al. NEURON
- Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
- (2014) J. M. C. Tubio et al. SCIENCE
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
- (2012) Mark J Chaisson et al. BMC BIOINFORMATICS
- Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
- (2012) Gilad D. Evrony et al. CELL
- Single-Cell Exome Sequencing and Monoclonal Evolution of a JAK2-Negative Myeloproliferative Neoplasm
- (2012) Yong Hou et al. CELL
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell
- (2012) C. Zong et al. SCIENCE
- LINE-1 Elements in Structural Variation and Disease
- (2011) Christine R. Beck et al. Annual Review of Genomics and Human Genetics
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Retrotransposition of marked SVA elements by human L1s in cultured cells
- (2011) Dustin C. Hancks et al. HUMAN MOLECULAR GENETICS
- Somatic retrotransposition alters the genetic landscape of the human brain
- (2011) J. Kenneth Baillie et al. NATURE
- Mapping copy number variation by population-scale genome sequencing
- (2011) Ryan E. Mills et al. NATURE
- The non-autonomous retrotransposon SVA is trans -mobilized by the human LINE-1 protein machinery
- (2011) Julija Raiz et al. NUCLEIC ACIDS RESEARCH
- A novel web-based TinT application and the chronology of the Primate Alu retroposon activity
- (2010) Gennady Churakov et al. BMC EVOLUTIONARY BIOLOGY
- A Human Genome Structural Variation Sequencing Resource Reveals Insights into Mutational Mechanisms
- (2010) Jeffrey M. Kidd et al. CELL
- LINE-1 Retrotransposition Activity in Human Genomes
- (2010) Christine R. Beck et al. CELL
- Mobile Interspersed Repeats Are Major Structural Variants in the Human Genome
- (2010) Cheng Ran Lisa Huang et al. CELL
- Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons
- (2010) Rebecca C. Iskow et al. CELL
- Fine-scale recombination rate differences between sexes, populations and individuals
- (2010) Augustine Kong et al. NATURE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Mobile elements create structural variation: Analysis of a complete human genome
- (2009) J. Xing et al. GENOME RESEARCH
- L1 retrotransposition in human neural progenitor cells
- (2009) Nicole G. Coufal et al. NATURE
- Design of 240,000 orthogonal 25mer DNA barcode probes
- (2009) Q. Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project
- (2008) Roger Horton et al. IMMUNOGENETICS
- Mapping and sequencing of structural variation from eight human genomes
- (2008) Jeffrey M. Kidd et al. NATURE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started