Formaldehyde-assisted isolation of regulatory DNA elements from Arabidopsis leaves

Isolation of Open Chromatin Identifies Regulators of Systemic Acquired Resistance

(2019) Stephani Baum et al.   PLANT PHYSIOLOGY

Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules

(2017) Kelsey A. Maher et al.   PLANT CELL

Sulforaphane Modifies Histone H3, Unpacks Chromatin, and Primes Defense

(2017) Britta Schillheim et al.   PLANT PHYSIOLOGY

The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome

(2015) Tanya Z. Berardini et al.   GENESIS

Photosynthetic Genes and Genes Associated with the C4 Trait in Maize Are Characterized by a Unique Class of Highly Regulated Histone Acetylation Peaks on Upstream Promoters

(2015) Renke Perduns et al.   PLANT PHYSIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Chromatin accessibility: a window into the genome

(2014) Maria Tsompana et al.   Epigenetics & Chromatin

Systemic Acquired Resistance: Turning Local Infection into Global Defense

(2013) Zheng Qing Fu et al.   Annual Review of Plant Biology

A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements fromArabidopsis thaliana

(2013) Mohammad Amin Omidbakhshfard et al.   Journal of Integrative Plant Biology

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Genetic Landscape of Open Chromatin in Yeast

(2013) Kibaick Lee et al.   PLoS Genetics

Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA

(2012) Jeremy M Simon et al.   Nature Protocols

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

(2011) L. Song et al.   GENOME RESEARCH

Transcription Factor–Dependent Chromatin Remodeling at Heat Shock and Copper-Responsive Promoters inChlamydomonas reinhardtii

(2011) Daniela Strenkert et al.   PLANT CELL

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

Nucleosome landscape and control of transcription in the human malaria parasite

(2010) N. Ponts et al.   GENOME RESEARCH

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

(2010) A. P. Boyle et al.   GENOME RESEARCH

A map of open chromatin in human pancreatic islets

(2010) Kyle J Gaulton et al.   NATURE GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)

(2009) Paul G. Giresi et al.   METHODS

Tissue- and Expression Level-Specific Chromatin Looping at Maize b1 Epialleles

(2009) M. Louwers et al.   PLANT CELL