Prevention of tuberculosis in macaques after intravenous BCG immunization

Prevention of tuberculosis infection and disease by local BCG in repeatedly exposed rhesus macaques

(2019) Karin Dijkman et al.   NATURE MEDICINE

HIV-1 and SIV Infection Are Associated with Early Loss of Lung Interstitial CD4+ T Cells and Dissemination of Pulmonary Tuberculosis

(2019) Björn Corleis et al.   Cell Reports

Tissue-Resident T Cells and Other Resident Leukocytes

(2019) David Masopust et al.   Annual Review of Immunology

Harnessing donor unrestricted T-cells for new vaccines against tuberculosis

(2019) Simone A. Joosten et al.   VACCINE

BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis

(2018) Eva Kaufmann et al.   CELL

Mycobacterial growth inhibition is associated with trained innate immunity

(2018) Simone A. Joosten et al.   JOURNAL OF CLINICAL INVESTIGATION

Prevention of tuberculosis in rhesus macaques by a cytomegalovirus-based vaccine

(2018) Scott G Hansen et al.   NATURE MEDICINE

A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes

(2018) Roshni Roy Chowdhury et al.   NATURE

Host resistance to pulmonary Mycobacterium tuberculosis infection requires CD153 expression

(2018) Michelle A. Sallin et al.   Nature Microbiology

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Comparison of pellicle and shake flask-grown BCG strains by quality control assays and protection studies

(2018) Megan Fitzpatrick et al.   TUBERCULOSIS

Adoptive Transfer of Phosphoantigen-Specific γδ T Cell Subset AttenuatesMycobacterium tuberculosisInfection in Nonhuman Primates

(2017) Arwa Qaqish et al.   JOURNAL OF IMMUNOLOGY

Defective positioning in granulomas but not lung-homing limits CD4 T-cell interactions with Mycobacterium tuberculosis-infected macrophages in rhesus macaques

(2017) K D Kauffman et al.   Mucosal Immunology

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

(2017) Todd M Gierahn et al.   NATURE METHODS

Digitally Barcoding Mycobacterium tuberculosis Reveals In Vivo Infection Dynamics in the Macaque Model of Tuberculosis

(2017) Constance J. Martin et al.   mBio

Analysis of 18FDG PET/CT Imaging as a Tool for Studying Mycobacterium tuberculosis Infection and Treatment in Non-human Primates

(2017) Alexander G. White et al.   Jove-Journal of Visualized Experiments

Polyfunctional CD4+ T Cells As Targets for Tuberculosis Vaccination

(2017) Deborah A. Lewinsohn et al.   Frontiers in Immunology

A Functional Role for Antibodies in Tuberculosis

(2016) Lenette L. Lu et al.   CELL

Effects of B Cell Depletion on Early Mycobacterium tuberculosis Infection in Cynomolgus Macaques

(2016) Jiayao Phuah et al.   INFECTION AND IMMUNITY

Bacillus Calmette–Guérin (BCG) Revaccination of Adults with LatentMycobacterium tuberculosisInfection Induces Long-Lived BCG-Reactive NK Cell Responses

(2016) Sara Suliman et al.   JOURNAL OF IMMUNOLOGY

MR1-restricted mucosal-associated invariant T (MAIT) cells respond to mycobacterial vaccination and infection in nonhuman primates

(2016) J M Greene et al.   Mucosal Immunology

Alternative BCG delivery strategies improve protection against Mycobacterium tuberculosis in non-human primates: Protection associated with mycobacterial antigen-specific CD4 effector memory T-cell populations

(2016) S. Sharpe et al.   TUBERCULOSIS

IL-21 signaling is essential for optimal host resistance against Mycobacterium tuberculosis infection

(2016) Matthew G. Booty et al.   Scientific Reports

Systematic review of mathematical models exploring the epidemiological impact of future TB vaccines

(2016) Rebecca C. Harris et al.   Human Vaccines & Immunotherapeutics

CD4 T Cell-Derived IFN-γ Plays a Minimal Role in Control of Pulmonary Mycobacterium tuberculosis Infection and Must Be Actively Repressed by PD-1 to Prevent Lethal Disease

(2016) Shunsuke Sakai et al.   PLoS Pathogens

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

ICOS and Bcl6-dependent pathways maintain a CD4 T cell population with memory-like properties during tuberculosis

(2015) Albanus O. Moguche et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Interferon γ and Tumor Necrosis Factor Are Not Essential Parameters of CD4+T-Cell Responses for Vaccine Control of Tuberculosis

(2015) Mark T. Orr et al.   JOURNAL OF INFECTIOUS DISEASES

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Mucosal vaccination with attenuated Mycobacterium tuberculosis induces strong central memory responses and protects against tuberculosis

(2015) Deepak Kaushal et al.   Nature Communications

Variability in Tuberculosis Granuloma T Cell Responses Exists, but a Balance of Pro- and Anti-inflammatory Cytokines Is Associated with Sterilization

(2015) Hannah Priyadarshini Gideon et al.   PLoS Pathogens

Early Changes by 18Fluorodeoxyglucose Positron Emission Tomography Coregistered with Computed Tomography Predict Outcome after Mycobacterium tuberculosis Infection in Cynomolgus Macaques

(2014) M. T. Coleman et al.   INFECTION AND IMMUNITY

Cutting Edge: Control of Mycobacterium tuberculosis Infection by a Subset of Lung Parenchyma-Homing CD4 T Cells

(2014) S. Sakai et al.   JOURNAL OF IMMUNOLOGY

T-cell activation by transitory neo-antigens derived from distinct microbial pathways

(2014) Alexandra J. Corbett et al.   NATURE

Intravascular staining for discrimination of vascular and tissue leukocytes

(2014) Kristin G Anderson et al.   Nature Protocols

Longitudinal Changes in CD4+ T-Cell Memory Responses Induced by BCG Vaccination of Newborns

(2013) Andreia P. Soares, Cheong K. C. Kwong Chung, Terry Choice, E. Jane Hughes, Gail Jacobs, Esme Janse van Rensburg, Gloria Khomba, Marwou de Kock, Lesedi Lerumo, Lebohang Makhethe, Mbulelo H. Maneli, Bernadette Pienaar, Erica Smit, Nontobeko G. Tena-Coki, Leandre van Wyk, W. Henry Boom et al.   JOURNAL OF INFECTIOUS DISEASES

Long-Lasting Effects of BCG Vaccination on Both Heterologous Th1/Th17 Responses and Innate Trained Immunity

(2013) Johanneke Kleinnijenhuis et al.   Journal of Innate Immunity

Sterilization of granulomas is common in active and latent tuberculosis despite within-host variability in bacterial killing

(2013) Philana Ling Lin et al.   NATURE MEDICINE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

SPICE: Exploration and analysis of post-cytometric complex multivariate datasets

(2011) Mario Roederer et al.   CYTOMETRY PART A

Ultra-low dose of Mycobacterium tuberculosis aerosol creates partial infection in mice

(2011) Divey Saini et al.   TUBERCULOSIS

Cell-Mediated Immune Responses in Tuberculosis

(2009) Andrea M. Cooper   Annual Review of Immunology

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS