Gene family expansion of pinewood nematode to detoxify its host defence chemicals

Enhancement of oxidative stress contributes to increased pathogenicity of the invasive pine wood nematode

(2019) Wei Zhang et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparative Transcriptome Analysis of the Pinewood Nematode Bursaphelenchus xylophilus Reveals the Molecular Mechanism Underlying Its Defense Response to Host-Derived α-pinene

(2019) Yongxia Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

CO2 drives the pine wood nematode off its insect vector

(2019) Yixia Wu et al.   CURRENT BIOLOGY

Immune tolerance of vector beetle to its partner plant parasitic nematode modulated by its insect parasitic nematode

(2018) Jiao Zhou et al.   FASEB JOURNAL

The alcohol dehydrogenase with a broad range of substrate specificity regulates vitality and reproduction of the plant-parasitic nematode Bursaphelenchus xylophilus

(2018) Linsong Wang et al.   PARASITOLOGY

The genomic basis of parasitism in the Strongyloides clade of nematodes

(2016) Vicky L Hunt et al.   NATURE GENETICS

Characterization of glutathione S-transferases from the pine wood nematode, Bursaphelenchus xylophilus

(2016) Margarida Espada et al.   NEMATOLOGY

Pine wilt disease alters soil properties and root-associated fungal communities in Pinus tabulaeformis forest

(2016) Honglong Chu et al.   PLANT AND SOIL

Ascarosides coordinate the dispersal of a plant-parasitic nematode with the metamorphosis of its vector beetle

(2016) Lilin Zhao et al.   Nature Communications

Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits

(2015) Juan E. Palomares-Rius et al.   BMC GENOMICS

Identification and characterization of parasitism genes from the pinewood nematodeBursaphelenchus xylophilusreveals a multilayered detoxification strategy

(2015) Margarida Espada et al.   MOLECULAR PLANT PATHOLOGY

Characterisation of GST genes from the Chinese white pine beetleDendroctonus armandi(Curculionidae: Scolytinae) and their response to host chemical defence

(2015) Lulu Dai et al.   PEST MANAGEMENT SCIENCE

Significant Microsynteny with New Evolutionary Highlights Is Detected through Comparative Genomic Sequence Analysis of Maize CCCH IX Gene Subfamily

(2015) Wei-Jun Chen et al.   International Journal of Genomics

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Evolutionary responses to global change: lessons from invasive species

(2014) Emily V. Moran et al.   ECOLOGY LETTERS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Yeast Diversity Associated with Invasive Dendroctonus valens Killing Pinus tabuliformis in China Using Culturing and Molecular Methods

(2014) Qiao-Zhe Lou et al.   MICROBIAL ECOLOGY

Go forth, evolve and prosper: the genetic basis of adaptive evolution in an invasive species

(2014) Steven J. Franks et al.   MOLECULAR ECOLOGY

Pine Wood Nematode,Bursaphelenchus xylophilus

(2013) Kazuyoshi Futai   Annual Review of Phytopathology

A native fungal symbiont facilitates the prevalence and development of an invasive pathogen–native vector symbiosis

(2013) Lilin Zhao et al.   ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods

(2013) Zhijian Cao et al.   Nature Communications

Metagenomic analysis of the pinewood nematode microbiome reveals a symbiotic relationship critical for xenobiotics degradation

(2013) Xin-Yue Cheng et al.   Scientific Reports

Comparative transcriptomics of two pathogenic pinewood nematodes yields insights into parasitic adaptation to life on pine hosts

(2012) Xia Yan et al.   GENE

Isolation and expression of cytochrome P450 genes in the antennae and gut of pine beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae) following exposure to host monoterpenes

(2012) Claudia Cano-Ramírez et al.   GENE

The Ratio and Concentration of Two Monoterpenes Mediate Fecundity of the Pinewood Nematode and Growth of Its Associated Fungi

(2012) Hongtao Niu et al.   PLoS One

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Comparative Genetics and Genomics of Nematodes: Genome Structure, Development, and Lifestyle

(2011) Ralf J. Sommer et al.   Annual Review of Genetics

Ogataea saltuana sp. nov., a novel methanol-assimilating yeast species

(2011) Gábor Péter et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Biooxidation of monoterpenes with bacterial monooxygenases

(2011) Hendrik Schewe et al.   PROCESS BIOCHEMISTRY

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

(2011) Todd J. Treangen et al.   PLoS Genetics

Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus

(2011) Taisei Kikuchi et al.   PLoS Pathogens

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

The life and death of gene families

(2009) Jeffery P. Demuth et al.   BIOESSAYS

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

(2009) Hanny van Megen et al.   NEMATOLOGY

Monoterpene and sesquiterpene synthases and the origin of terpene skeletal diversity in plants

(2009) Jörg Degenhardt et al.   PHYTOCHEMISTRY

Evolution of the chicken Toll-like receptor gene family: A story of gene gain and gene loss

(2008) Nicholas D Temperley et al.   BMC GENOMICS

Rapid Evolution by Positive Selection and Gene Gain and Loss: PLA2 Venom Genes in Closely Related Sistrurus Rattlesnakes with Divergent Diets

(2008) H. Lisle Gibbs et al.   JOURNAL OF MOLECULAR EVOLUTION

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY