Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children

Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids

(2019) Kai Wang et al.   Cell Reports

Metatranscriptomics of the Hu sheep rumen microbiome reveals novel cellulases

(2019) Bo He et al.   Biotechnology for Biofuels

Bifidobacterial Dialogue With Its Human Host and Consequent Modulation of the Immune System

(2019) Giulia Alessandri et al.   Frontiers in Immunology

Subgingival microbial profile of obese women with periodontal disease

(2018) Carina M. Silva-Boghossian et al.   JOURNAL OF PERIODONTOLOGY

Pregestational overweight and obesity are associated with differences in gut microbiota composition and systemic inflammation in the third trimester

(2018) María Florencia Zacarías et al.   PLoS One

Metatranscriptome of human faecal microbial communities in a cohort of adult men

(2018) Galeb S. Abu-Ali et al.   Nature Microbiology

Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography

(2018) Mélanie Deschasaux et al.   NATURE MEDICINE

Secret-AAR: a web server to assess the antigenic density of proteins and homology search against bacterial and parasite secretome proteins

(2018) Fernanda Cornejo-Granados et al.   GENOMICS

Multiomic Strategies Reveal Diversity and Important Functional Aspects of Human Gut Microbiome

(2018) Ravi Ranjan et al.   Biomed Research International

Altered Gut Microbiota and Compositional Changes in Firmicutes and Proteobacteria in Mexican Undernourished and Obese Children

(2018) Eder Orlando Méndez-Salazar et al.   Frontiers in Microbiology

The gut microbiome of Mexican children affected by obesity

(2018) Otoniel Maya-Lucas et al.   ANAEROBE

Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention

(2017) Ruixin Liu et al.   NATURE MEDICINE

Tracking Proteins Secreted by Bacteria: What's in the Toolbox?

(2017) Benoit Maffei et al.   Frontiers in Cellular and Infection Microbiology

Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets

(2017) Fernanda Cornejo-Granados et al.   Frontiers in Microbiology

Functional Characterization of Novel Faecalibacterium prausnitzii Strains Isolated from Healthy Volunteers: A Step Forward in the Use of F. prausnitzii as a Next-Generation Probiotic

(2017) Rebeca Martín et al.   Frontiers in Microbiology

An insider's perspective: Bacteroides as a window into the microbiome

(2017) Aaron G. Wexler et al.   Nature Microbiology

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

(2016) Ara Koh et al.   CELL

Comparison of the gut microbial community between obese and lean peoples using 16S gene sequencing in a Japanese population

(2016) Akira Andoh et al.   JOURNAL OF CLINICAL BIOCHEMISTRY AND NUTRITION

The gut microbial community in metabolic syndrome patients is modified by diet

(2016) Carmen Haro et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Deconjugated Bile Salts Produced by Extracellular Bile-Salt Hydrolase-Like Activities from the Probiotic Lactobacillus johnsonii La1 Inhibit Giardia duodenalis In vitro Growth

(2016) Marie-Agnès Travers et al.   Frontiers in Microbiology

Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing

(2015) Chika Kasai et al.   BMC GASTROENTEROLOGY

Global Profiling of Carbohydrate Active Enzymes in Human Gut Microbiome

(2015) Tanudeep Bhattacharya et al.   PLoS One

Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR)

(2015) Sandra Gomez et al.   Scientific Reports

Insights into the Role of Erysipelotrichaceae in the Human Host

(2015) Nadeem O. Kaakoush   Frontiers in Cellular and Infection Microbiology

Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome

(2015) Shirley Bikel et al.   Computational and Structural Biotechnology Journal

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome

(2013) Corinne Ferrier Maurice et al.   CELL

Associations between the human intestinal microbiota,Lactobacillus rhamnosusGG and serum lipids indicated by integrated analysis of high-throughput profiling data

(2013) Leo Lahti et al.   PeerJ

Metabolic syndrome and its components among obese (BMI ≥95th) Mexican adolescents

(2013) Maria Lola Evia-Viscarra et al.   Endocrine Connections

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Metatranscriptomic Approach to Analyze the Functional Human Gut Microbiota

(2011) María José Gosalbes et al.   PLoS One

The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins

(2011) N. P. McNulty et al.   Science Translational Medicine

Metatranscriptome Analysis of the Human Fecal Microbiota Reveals Subject-Specific Expression Profiles, with Genes Encoding Proteins Involved in Carbohydrate Metabolism Being Dominantly Expressed

(2010) C. C. G. M. Booijink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Association Between Composition of the Human Gastrointestinal Microbiome and Development of Fatty Liver With Choline Deficiency

(2010) Melanie D. Spencer et al.   GASTROENTEROLOGY

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

(2010) P. J. Turnbaugh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probiotic Bile Salt Hydrolase: Current Developments and Perspectives

(2009) Anil K. Patel et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice

(2009) Chenhong Zhang et al.   ISME Journal

Human gut microbiota in obesity and after gastric bypass

(2009) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

(2009) P. J. Turnbaugh et al.   Science Translational Medicine

Secretome: clues into pathogen infection and clinical applications

(2009) Shoba Ranganathan et al.   Genome Medicine

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH