A novel computational method for inferring competing endogenous interactions
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A novel computational method for inferring competing endogenous interactions
Authors
Keywords
-
Journal
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages bbw084
Publisher
Oxford University Press (OUP)
Online
2016-09-28
DOI
10.1093/bib/bbw084
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Computational methods for identifying miRNA sponge interactions
- (2016) Thuc Duy Le et al. BRIEFINGS IN BIOINFORMATICS
- Oncogenic Role of Fusion-circRNAs Derived from Cancer-Associated Chromosomal Translocations
- (2016) Jlenia Guarnerio et al. CELL
- Endogenous microRNA sponges: evidence and controversy
- (2016) Daniel W. Thomson et al. NATURE REVIEWS GENETICS
- LncRNAOIP5-AS1/cyranosponges RNA-binding protein HuR
- (2016) Jiyoung Kim et al. NUCLEIC ACIDS RESEARCH
- DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference
- (2015) Salvatore Alaimo et al. BMC Systems Biology
- The BRAF Pseudogene Functions as a Competitive Endogenous RNA and Induces Lymphoma In Vivo
- (2015) Florian A. Karreth et al. CELL
- Competing endogenous RNA networks: tying the essential knots for cancer biology and therapeutics
- (2015) Avencia Sanchez-Mejias et al. Journal of Hematology & Oncology
- The mRNA related ceRNA–ceRNA landscape and significance across 20 major cancer types
- (2015) Juan Xu et al. NUCLEIC ACIDS RESEARCH
- Long noncoding RNA BC032469, a novel competing endogenous RNA, upregulates hTERT expression by sponging miR-1207-5p and promotes proliferation in gastric cancer
- (2015) M-H Lü et al. ONCOGENE
- Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit
- (2015) Ye Yuan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs
- (2015) Peng Wang et al. Database-The Journal of Biological Databases and Curation
- Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer
- (2014) Paola Paci et al. BMC Systems Biology
- Abstract 5609: Bortezomib enhanced cytotoxic effects of novel sTRAIL-targeted nanocarriers against neuroectodermal tumors .
- (2014) Monica Loi et al. CANCER RESEARCH
- Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks
- (2014) Hua-Sheng Chiu et al. GENOME RESEARCH
- MIROR: a method for cell-type specific microRNA occupancy rate prediction
- (2014) Peng Xie et al. Molecular BioSystems
- Assessing the ceRNA Hypothesis with Quantitative Measurements of miRNA and Target Abundance
- (2014) Rémy Denzler et al. MOLECULAR CELL
- Endogenous miRNA and Target Concentrations Determine Susceptibility to Potential ceRNA Competition
- (2014) Andrew D. Bosson et al. MOLECULAR CELL
- The multilayered complexity of ceRNA crosstalk and competition
- (2014) Yvonne Tay et al. NATURE
- Competition between target sites of regulators shapes post-transcriptional gene regulation
- (2014) Marvin Jens et al. NATURE REVIEWS GENETICS
- COSMIC: exploring the world's knowledge of somatic mutations in human cancer
- (2014) Simon A. Forbes et al. NUCLEIC ACIDS RESEARCH
- lnCeDB: Database of Human Long Noncoding RNA Acting as Competing Endogenous RNA
- (2014) Shaoli Das et al. PLoS One
- HumanViCe: host ceRNA network in virus infected cells in human
- (2014) Suman Ghosal et al. Frontiers in Genetics
- Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis
- (2013) Ke Liu et al. BIOINFORMATICS
- Drug–target interaction prediction through domain-tuned network-based inference
- (2013) Salvatore Alaimo et al. BIOINFORMATICS
- Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
- (2013) Aleksandra Helwak et al. CELL
- Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation
- (2013) J. Hausser et al. GENOME RESEARCH
- Natural RNA circles function as efficient microRNA sponges
- (2013) Thomas B. Hansen et al. NATURE
- Circular RNAs are a large class of animal RNAs with regulatory potency
- (2013) Sebastian Memczak et al. NATURE
- A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets
- (2013) Mohsen Khorshid et al. NATURE METHODS
- starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
- (2013) Jun-Hao Li et al. NUCLEIC ACIDS RESEARCH
- miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions
- (2013) Sheng-Da Hsu et al. NUCLEIC ACIDS RESEARCH
- Modelling Competing Endogenous RNA Networks
- (2013) Carla Bosia et al. PLoS One
- Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments
- (2013) U. Ala et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulation of mammalian cell differentiation by long non-coding RNAs
- (2012) Wenqian Hu et al. EMBO REPORTS
- LIBSVM
- (2012) Chih-Chung Chang et al. ACM Transactions on Intelligent Systems and Technology
- Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs
- (2012) Ana C Marques et al. GENOME BIOLOGY
- Molecular signatures database (MSigDB) 3.0
- (2011) A. Liberzon et al. BIOINFORMATICS
- An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma
- (2011) Pavel Sumazin et al. CELL
- Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs
- (2011) Yvonne Tay et al. CELL
- A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA
- (2011) Marcella Cesana et al. CELL
- A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
- (2011) Leonardo Salmena et al. CELL
- miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA
- (2011) Thomas B Hansen et al. EMBO JOURNAL
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- MicroRNAs can generate thresholds in target gene expression
- (2011) Shankar Mukherji et al. NATURE GENETICS
- Upregulation of Cyclin B1 by miRNA and its implications in cancer
- (2011) Vera Huang et al. NUCLEIC ACIDS RESEARCH
- Pseudogenes: Pseudo-functional or key regulators in health and disease?
- (2011) R. C. Pink et al. RNA
- Improving performance of mammalian microRNA target prediction
- (2010) Hui Liu et al. BMC BIOINFORMATICS
- A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
- (2010) Laura Poliseno et al. NATURE
- Down-Regulation of a Host MicroRNA by a Herpesvirus saimiri Noncoding RNA
- (2010) D. Cazalla et al. SCIENCE
- Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
- (2010) Doron Betel et al. GENOME BIOLOGY
- Redefining MicroRNA Targets
- (2009) Hervé Seitz CURRENT BIOLOGY
- Most mammalian mRNAs are conserved targets of microRNAs
- (2008) R. C. Friedman et al. GENOME RESEARCH
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- miRecords: an integrated resource for microRNA-target interactions
- (2008) F. Xiao et al. NUCLEIC ACIDS RESEARCH
- MicroRNA-373 induces expression of genes with complementary promoter sequences
- (2008) R. F. Place et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started