A review of bioinformatic pipeline frameworks

Omics Pipe: a community-based framework for reproducible multi-omics data analysis

(2015) Kathleen M. Fisch et al.   BIOINFORMATICS

Experiences with workflows for automating data-intensive bioinformatics

(2015) Ola Spjuth et al.   Biology Direct

BigDataScript: a scripting language for data pipelines

(2014) P. Cingolani et al.   BIOINFORMATICS

Virtual Reference Environments: a simple way to make research reproducible

(2014) Daniel G. Hurley et al.   BRIEFINGS IN BIOINFORMATICS

Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses

(2014) Bo Liu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

(2013) Katherine Wolstencroft et al.   NUCLEIC ACIDS RESEARCH

Bpipe: a tool for running and managing bioinformatics pipelines

(2012) Simon P. Sadedin et al.   BIOINFORMATICS

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

Ruffus: a lightweight Python library for computational pipelines

(2010) Leo Goodstadt   BIOINFORMATICS

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY