Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing

The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities

(2019) Jennifer D. Rocca et al.   Frontiers in Microbiology

Harnessing undomesticated life

(2019) Elizabeth A. Libby et al.   Nature Microbiology

Phylofactorization: a graph partitioning algorithm to identify phylogenetic scales of ecological data

(2019) Alex D. Washburne et al.   ECOLOGICAL MONOGRAPHS

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Application of the microbial community coalescence concept to riverine networks

(2018) India Mansour et al.   BIOLOGICAL REVIEWS

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Dispersal Modifies the Diversity and Composition of Active Bacterial Communities in Response to a Salinity Disturbance

(2018) Dandan Shen et al.   Frontiers in Microbiology

Novel microbial community composition and carbon biogeochemistry emerge over time following saltwater intrusion in wetlands

(2018) Chansotheary Dang et al.   GLOBAL CHANGE BIOLOGY

Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems

(2018) Sara F. Paver et al.   mSystems

Contribution of different bacterial dispersal sources to lakes: Population and community effects in different seasons

(2017) Jérôme Comte et al.   ENVIRONMENTAL MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

Historical climate controls soil respiration responses to current soil moisture

(2017) Christine V. Hawkes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Two dynamic regimes in the human gut microbiome

(2017) Sean M. Gibbons et al.   PLoS Computational Biology

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

(2017) Alex D. Washburne et al.   PeerJ

Transcriptional Control in Marine Copiotrophic and Oligotrophic Bacteria with Streamlined Genomes

(2016) Matthew T. Cottrell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Drought and saltwater incursion synergistically reduce dissolved organic carbon export from coastal freshwater wetlands

(2016) Marcelo Ardón et al.   BIOGEOCHEMISTRY

Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea

(2016) Daniel P. R. Herlemann et al.   Frontiers in Microbiology

Next generation of microbial inoculants for agriculture and bioremediation

(2016) Antonino Baez-Rogelio et al.   Microbial Biotechnology

PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences

(2015) Siavash Mirarab et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Interchange of entire communities: microbial community coalescence

(2015) Matthias C. Rillig et al.   TRENDS IN ECOLOGY & EVOLUTION

Diverse uncultivated ultra-small bacterial cells in groundwater

(2015) Birgit Luef et al.   Nature Communications

The dynamics of community assembly under sudden mixing in experimental microcosms

(2013) George Livingston et al.   ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Bacterial Cell Surface Damage Due to Centrifugal Compaction

(2011) Brandon W. Peterson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recruitment of Members from the Rare Biosphere of Marine Bacterioplankton Communities after an Environmental Disturbance

(2011) Johanna Sjöstedt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A small population of planktonicFlavobacteriawith disproportionally high growth during the spring phytoplankton bloom in a prealpine lake

(2009) Michael Zeder et al.   ENVIRONMENTAL MICROBIOLOGY

Saltwater intrusion in coastal regions of North America

(2009) Paul M. Barlow et al.   HYDROGEOLOGY JOURNAL

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Infrequent marine–freshwater transitions in the microbial world

(2009) Ramiro Logares et al.   TRENDS IN MICROBIOLOGY

Forecasting the effects of accelerated sea-level rise on tidal marsh ecosystem services

(2008) Christopher Craft et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT