Quantifying differences in cell line population dynamics using CellPD

An unbiased metric of antiproliferative drug effect in vitro

(2016) Leonard A Harris et al.   NATURE METHODS

A high-content image-based method for quantitatively studying context-dependent cell population dynamics

(2016) Colleen M. Garvey et al.   Scientific Reports

Computational oncology — mathematical modelling of drug regimens for precision medicine

(2015) Dominique Barbolosi et al.   Nature Reviews Clinical Oncology

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

(2015) Jonathan R. Karr et al.   PLoS Computational Biology

grofit: Fitting Biological Growth Curves withR

(2015) Matthias Kahm et al.   Journal of Statistical Software

Protocols and Programs for High-Throughput Growth and Aging Phenotyping in Yeast

(2015) Paul P. Jung et al.   PLoS One

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

(2014) Juliane Liepe et al.   Nature Protocols

Automated method for the rapid and precise estimation of adherent cell culture characteristics from phase contrast microscopy images

(2013) Nicolas Jaccard et al.   BIOTECHNOLOGY AND BIOENGINEERING

BGFit: management and automated fitting of biological growth curves

(2013) André Veríssimo et al.   BMC BIOINFORMATICS

Growth Rates Made Easy

(2013) B. G. Hall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Facilitating reproducibility

(2013)   Nature Chemical Biology

A Survey on Data Reproducibility in Cancer Research Provides Insights into Our Limited Ability to Translate Findings from the Laboratory to the Clinic

(2013) Aaron Mobley et al.   PLoS One

Ten Simple Rules for Reproducible Computational Research

(2013) Geir Kjetil Sandve et al.   PLoS Computational Biology

Genotype-Environment Interactions Reveal Causal Pathways That Mediate Genetic Effects on Phenotype

(2013) Julien Gagneur et al.   PLoS Genetics

Raise standards for preclinical cancer research

(2012) C. Glenn Begley et al.   NATURE

Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology

(2010) Keith A. Baggerly et al.   Annals of Applied Statistics

High content screening: seeing is believing

(2010) Fabian Zanella et al.   TRENDS IN BIOTECHNOLOGY

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

(2009) Alexander W Bell et al.   NATURE METHODS