Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice
Authors
Keywords
SiRNA, Cluster, Dehydration, Rice
Journal
BMC Systems Biology
Volume 10, Issue S4, Pages -
Publisher
Springer Nature
Online
2016-12-23
DOI
10.1186/s12918-016-0355-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The MEME Suite
- (2015) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
- piClust: A density based piRNA clustering algorithm
- (2014) Inuk Jung et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Classification and Comparison of Small RNAs from Plants
- (2013) Michael J. Axtell Annual Review of Plant Biology
- Ensembl Genomes 2013: scaling up access to genome-wide data
- (2013) Paul Julian Kersey et al. NUCLEIC ACIDS RESEARCH
- Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics
- (2013) Hiroaki Sakai et al. PLANT AND CELL PHYSIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Oxidative stress, protein carbonylation, proteolysis and antioxidative defense system as a model for depicting water deficit tolerance in Indica rice seedlings
- (2012) Samantha Pyngrope et al. PLANT GROWTH REGULATION
- Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
- (2011) Basel Khraiwesh et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- MEME-ChIP: motif analysis of large DNA datasets
- (2011) Philip Machanick et al. BIOINFORMATICS
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- ROS and redox signalling in the response of plants to abiotic stress
- (2011) NOBUHIRO SUZUKI et al. PLANT CELL AND ENVIRONMENT
- Plant siRNAs from introns mediate DNA methylation of host genes
- (2011) D. Chen et al. RNA
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- Functional analysis of six drought-inducible promoters in transgenic rice plants throughout all stages of plant growth
- (2010) Nari Yi et al. PLANTA
- siRNA–Mediated Methylation of Arabidopsis Telomeres
- (2010) Jan Vrbsky et al. PLoS Genetics
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell
- (2008) M. M. Chaves et al. ANNALS OF BOTANY
- Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs
- (2008) H. Kuang et al. GENOME RESEARCH
- Mechanisms of plant survival and mortality during drought: why do some plants survive while others succumb to drought?
- (2008) Nate McDowell et al. NEW PHYTOLOGIST
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started