Site-specific recombinatorics: in situ cellular barcoding with the Cre Lox system

The Branching Point in Erythro-Myeloid Differentiation

(2015) Leïla Perié et al.   CELL

Studying clonal dynamics in response to cancer therapy using high-complexity barcoding

(2015) Hyo-eun C Bhang et al.   NATURE MEDICINE

Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex

(2015) Matthew B Johnson et al.   NATURE NEUROSCIENCE

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

Tracing Dynamics and Clonal Heterogeneity of Cbx7-Induced Leukemic Stem Cells by Cellular Barcoding

(2015) Karin Klauke et al.   Stem Cell Reports

Quantitative Single-Cell Approaches to Stem Cell Research

(2014) Martin Etzrodt et al.   Cell Stem Cell

Cellular barcoding: A technical appraisal

(2014) Shalin H. Naik et al.   EXPERIMENTAL HEMATOLOGY

Extracting meaning from biological imaging data

(2014) Andrew R. Cohen   MOLECULAR BIOLOGY OF THE CELL

Clonal dynamics of native haematopoiesis

(2014) Jianlong Sun et al.   NATURE

In vivo generation of DNA sequence diversity for cellular barcoding

(2014) Ian D. Peikon et al.   NUCLEIC ACIDS RESEARCH

Single cell behavior in T cell differentiation

(2014) Jan C. Rohr et al.   TRENDS IN IMMUNOLOGY

Determining Lineage Pathways from Cellular Barcoding Experiments

(2014) Leïla Perié et al.   Cell Reports

Heterogeneity of young and aged murine hematopoietic stem cells revealed by quantitative clonal analysis using cellular barcoding

(2013) E. Verovskaya et al.   BLOOD

Heterogeneity and hierarchy of hematopoietic stem cells

(2013) Hideo Ema et al.   EXPERIMENTAL HEMATOLOGY

Genetic Basis of Neuronal Individuality in the Mammalian Brain

(2013) Takeshi Yagi   JOURNAL OF NEUROGENETICS

Diverse and heritable lineage imprinting of early haematopoietic progenitors

(2013) Shalin H. Naik et al.   NATURE

Improved tools for the Brainbow toolbox

(2013) Dawen Cai et al.   NATURE METHODS

Measurement of Cancer Cell Growth Heterogeneity through Lentiviral Barcoding Identifies Clonal Dominance as a Characteristic of In Vivo Tumor Engraftment

(2013) Olivier Nolan-Stevaux et al.   PLoS One

Disparate Individual Fates Compose Robust CD8+ T Cell Immunity

(2013) V. R. Buchholz et al.   SCIENCE

Arrayed lentiviral barcoding for quantification analysis of hematopoietic dynamics

(2013) Jeanne Grosselin et al.   STEM CELLS

Characterizing and measuring bias in sequence data

(2013) Michael G Ross et al.   GENOME BIOLOGY

An Exactly Solvable Model of Random Site-Specific Recombinations

(2012) Yi Wei et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Lineage Tracing

(2012) Kai Kretzschmar et al.   CELL

Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos

(2012) C. A. Giurumescu et al.   DEVELOPMENT

A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress

(2012) Julia L. Richards et al.   DEVELOPMENTAL BIOLOGY

Counting stem cells: methodological constraints

(2012) Leonid V Bystrykh et al.   NATURE METHODS

Tamoxifen-Induced Cre-loxP Recombination Is Prolonged in Pancreatic Islets of Adult Mice

(2012) Rachel B. Reinert et al.   PLoS One

THE ANALYSIS OF SINGLETONS IN GENERALIZED BIRTHDAY PROBLEMS

(2012) Matthijs R. Koot et al.   PROBABILITY IN THE ENGINEERING AND INFORMATIONAL SCIENCES

Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence

(2012) J. N. M. Pinkney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation-Induced B Cell Fates Are Selected by Intracellular Stochastic Competition

(2012) K. R. Duffy et al.   SCIENCE

Intracellular competition for fates in the immune system

(2012) Ken R. Duffy et al.   TRENDS IN CELL BIOLOGY

Sequencing the Connectome

(2012) Anthony M. Zador et al.   PLOS BIOLOGY

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

(2011) Rong Lu et al.   NATURE BIOTECHNOLOGY

Cellular barcoding tool for clonal analysis in the hematopoietic system

(2010) A. Gerrits et al.   BLOOD

Reconstruction of rat retinal progenitor cell lineages in vitro reveals a surprising degree of stochasticity in cell fate decisions

(2010) F. L. A. F. Gomes et al.   DEVELOPMENT

BAC Modification through Serial or Simultaneous Use of CRE/Lox Technology

(2010) Mark Parrish et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

One naive T cell, multiple fates in CD8+T cell differentiation

(2010) Carmen Gerlach et al.   JOURNAL OF EXPERIMENTAL MEDICINE

A minimum of two distinct heritable factors are required to explain correlation structures in proliferating lymphocytes

(2010) J. F. Markham et al.   Journal of the Royal Society Interface

A single-cell pedigree analysis of alternative stochastic lymphocyte fates

(2009) E. D. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hematopoietic Cytokines Can Instruct Lineage Choice

(2009) M. A. Rieger et al.   SCIENCE

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Dissecting T cell lineage relationships by cellular barcoding

(2008) Koen Schepers et al.   JOURNAL OF EXPERIMENTAL MEDICINE